FEATURES             Location/Qualifiers
     gene            complement(545..2263)
                     /locus_tag="Alpa_01"
     CDS             complement(545..2263)
                     /product="predicted protein"
                     /protein_id="gnl|USP|Alpa_01"
                     /translation="MITKELQNKLATRCQHPRTVVNKYTHEPVVVSCGCCPSCVLRRSAVQTNLLTTYSAQFRYIYFVTLTYAPRFLPTLEVSIIETCSDDIADVPCVPNINELDDSDPNTYLFGFRNIPRSASIKLKNSTVERTFKDPEVKFSYPMKPKELLSILGKVKHDVPNRIPYICNRDLDLFLKRLRSYYLDEKLRYYAVSEYGPTSFRPHWHLLLFSNSERFSETICENISKAWSYGRCDASLSRGFAAPYVASYVNSFVALPNFYTQMPKVVRPKSFHSIGFTESNLFPRKVRITEIDEVTNKCLDGVSVERNGRFRTIKPTWPYLLRLFPRFSDPIRKLPSSVYQLLLSALSAPARVIRGGCADITCDPFNVNAPSKQSILSFCKQYLNYVDNYGKSNECRNFLSPQANLPYSDVLILTECRLYDGTDLESTHRLSRVYRFFLGISKFIRTYSVDGCSELFWSSGTPGGELFGRDRFLRIISEKIVTFWNRYDYNRLVDFYQTLEDANDRDLVDFELRNYSFRYNRPPDNKEKPYNKLPLVRRLAAVALMKCRGKVKHKKLNDLSGLFFYQDDPDIV"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP4"
                     /inference="similar to AA sequence:INSD:WP_021963494.1"
                     /inference="similar to AA sequence:INSD:WP_008775335.1"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2260..2568)
                     /locus_tag="Alpa_02"
     CDS             complement(2260..2568)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_02"
                     /translation="MNPELMKFVEWLLHRNIHFTVTSAFRTEKQNNECNGAKTSQHLTGDAIDLKPLYFSVDEFISMIKDSPFKFDQLIKYRSFIHISFARGRKPRLMELNFTDRK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.peptidase.M15A"
                     /inference="similar to AA sequence:INSD:WP_008629051.1"
                     /inference="similar to AA sequence:INSD:WP_029886185.1"
                     /db_xref="InterPro:IPR013230"
                     /db_xref="InterPro:IPR009045"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(2651..2824)
                     /locus_tag="Alpa_03"
     CDS             complement(2651..2824)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_03"
                     /translation="MEKYYLCSIQSKLNPSQCETVLVPVDEVSDFVSSNLRPDCILIFSQCSTFKAISHEK"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(3295..4392)
                     /locus_tag="Alpa_04"
     CDS             complement(3295..4392)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_04"
                     /translation="MGLLGSITGGLLGLGSSAVQNSQNRQNVRETNQMNYKINQMNNQFNERMAIQQRNWQENMWNKENAYNTASAQRQRLEEAGLNPYLMMNGGSAGVAQSAGNGATAASSGNAVMQPFQADYSGIGSSIGNIFQYDLMQSEKSQLQGARQLSDAKAMETLSNIDWGNLTAETRNYLRSTGLARAQLGYVKEQQEVDNMAMTGLIMRAQRSGMLLDNEAKGILNKYLDQEQQLDLNVKAADYYQRMSAGYLSYAETKKALADEALAAARTRGQKISNEVASRIAESQIAANIAANQSSEAYHNEELKLGLSQDNARSKNIEEWYRSRNEKKRYKYYDADKWVEYGTNIGNIIGNFLPRRIVSKTFPRR"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="protein motif:Phobius:1.01"
                     /note="Signal peptide predicted by Phobius with cleavage site between residues 18 and 19 "
                     /inference="protein motif:SignalP:4.0"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein.BACPLE"
                     /inference="similar to AA sequence:MV_prot:putative.VP2"
                     /inference="similar to AA sequence:INSD:WP_007558289.1"
                     /inference="similar to AA sequence:INSD:WP_004291034.1"
                     /note="1 probable transmembrane helix predicted by TMHMM
                     Signal peptide predicted by SignalP 4.0 (Signal peptide probability ) with cleavage site probability  between residues 17 and 18"
     gene            complement(4392..4886)
                     /locus_tag="Alpa_05"
     CDS             complement(4392..4886)
                     /product="hypothetical protein"
                     /protein_id="gnl|USP|Alpa_05"
                     /translation="MIGKFNSLSSLEQGSGLIPNVEPDAFAVAPKFDSTEQLRVEIDDTDETRPVRYTSDVCLILHTKDLASRAGLAVASKFGQSKQPISQIQQIMDTMSDEDLLATIRSRYIQSPSEIIAWSKELSAYAENLESQAQELIDAENARQEAEKAAAAPAAASADAPSTE"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:hypothetical.protein"
                     /note="1 probable transmembrane helix predicted by TMHMM"
     gene            complement(4901..6055)
                     /locus_tag="Alpa_06"
     CDS             complement(4901..6055)
                     /product="putative uncharacterized protein"
                     /protein_id="gnl|USP|Alpa_06"
                     /translation="VDYFTGVSPSLISSLLSVSPDYWKSGTMFDLKYCNWNKDMLMGVLPNSQFGDVAVLDIPDSGDSNVVLGTDSHKSSVGIASAITSKTAPFPLFALDASPENPIPINSKLRLDLSSLKSQFTVLALRQAEALQRWKEISQSGDSDYREQIRKHFGVKLPQALSNMCTYIGGVSRNLDISEVVNNNLATEGDTAVIAGKGVGAGNGSFEYTTTEHCVVMCIYHAVPLLDYTLTGQDGQLLVTDAESLPIPEFDNIGMEVLPMTQVFNSPKASIVNLFNAGYNPRYFNWKTKLDVINGAFTTTLKSWVSPVTESLLSGWFCFGYNKDDAAPDTKVIMNYKFFKVNPSVLDPIFGVNADSTWDTDQLLVNSYIGCYVVRNLSRDGVPY"
                     /transl_table=11
                     /inference="ab initio prediction:Glimmer3:3.02"
                     /inference="similar to AA sequence:MV_prot:putative.VP1"
                     /inference="similar to AA sequence:INSD:WP_021963493.1"
                     /inference="similar to AA sequence:INSD:WP_008775336.1"
                     /db_xref="InterPro:IPR016184"
                     /db_xref="InterPro:IPR003514"
                     /GO_component="GO:0019028 - viral capsid"
                     /GO_function="GO:0005198 - structural molecule activity"
                     /note="1 probable transmembrane helix predicted by TMHMM"
ORIGIN
        1 cgaccagtgg attcagatga aattaaatta ccatagccaa gataactcaa aagcttatag 
       61 cacaaatccg aacggtcgaa accaaacata ttctttagag aagaagaatt accaggagtc 
      121 caactacgac cattaagaag atacatagca tcactaagta cagataaggg aatcgaaggt 
      181 aaaaaagttc caagcgacaa attttgagtc aaagacaagg cttgaatctt attaacatcc 
      241 tgcatttgtg ttaacacaga aggagcggac ttccaaagaa gacgtaacgg cacagcataa 
      301 aaatcaaaat actcacgcaa ccgggtataa gcagaagttt caacgggttg agtacgagta 
      361 aaatactcaa tgttaaaccg atacttatca ccaggcatag aaatatccca gtaaaccggg 
      421 agaagctcac caacttttgc agtgaatgca tttttgcgtc caatatcaaa tccagaacga 
      481 tgcgggtgat tctgaagatt ggacatacca gtgtaagaag ccatagtaaa aaaaaattaa 
      541 aaaattaaac aatatcaggg tcatcctgat aaaagaaaag accagacaaa tcattaagct 
      601 tcttgtgttt gaccttacct cgacatttca tcaacgccac agcagccaaa cgacgaacaa 
      661 gaggaagttt attgtaaggt ttttccttat tatcaggagg cctgttataa cgaaaggaat 
      721 agttacgaag ctcaaaatct accaaatctc tatcattagc atcctccaag gtttgataaa 
      781 aatccacaag gcgattataa tcataacgat tccaaaaagt aactattttt tcagagatta 
      841 ttcgtaagaa cctgtctcga ccaaagagct ctcctccagg agtgccgctg gaccagaaga 
      901 gttctgaaca tccgtccaca gaatacgttc gaataaattt tgaaattccg agaaaaaagc 
      961 ggtatacgcg ggagagacga tgagtagatt ccaaatcagt accatcgtac aaacgacatt 
     1021 cagtaagaat gagaacatca ctatacggta aattcgcctg aggagagagg aaattcctac 
     1081 attcatttga ttttccataa ttatctacat aatttaaata ttgtttacaa aaagacaaaa 
     1141 tgctttgctt agaaggagca tttacattaa atggatcaca agttatatct gcacatccgc 
     1201 cacgaatgac tcgtgcgggc gcagagagcg cagataataa taattggtaa acactcgatg 
     1261 gaagtttacg aatagggtcc gaaaatcggg ggaataatcg aaggagatac ggccaagtag 
     1321 gtttaattgt gcgaaaacgt ccattgcgct caacgctgac accatcaaga cacttattgg 
     1381 taacttcgtc aatttcggta attcgtacct ttcgaggaaa gagatttgat tctgtaaatc 
     1441 caatggaatg gaaggattta ggtcgcacca cttttggcat ttgagtataa aagttgggta 
     1501 aagcgacaaa actgttaaca tacgacgcaa catacggagc tgcgaatcct ctcgacaatg 
     1561 atgcatcaca acgtccgtaa gaccaagcct tagatatatt ttcacaaata gtttccgaga 
     1621 atcgctcgga attggaaaac aatagcaaat gccaatgcgg gcggaaactg gtagggccgt 
     1681 attctgatac agcgtagtaa cgtaattttt catccaggta ataacttctt aaacgtttta 
     1741 aaaataaatc caagtcacga ttacaaatat aaggaatcct atttggaaca tcatgtttaa 
     1801 cctttccaag gatagataaa agttccttag gtttcatagg ataagaaaac ttaacctcag 
     1861 gatctttaaa agttcgttca acagtagaat tcttcaattt aatagaggcg gaacgaggaa 
     1921 tgttgcgaaa accaaacaaa taagtattag ggtcactatc gtccaactca ttaatattgg 
     1981 gaacgcaggg cacatccgca atatcatccg aacaagtttc aataatcgaa acctccaaag 
     2041 taggaagaaa gcgaggagca taagtaagag taacaaaata aatataacgg aattgagcag 
     2101 aataagtggt aagaagattc gtctgaacag cagaacgacg aagaacacat gaaggacaac 
     2161 aaccacaaga aacaacaaca ggttcatgtg tatacttatt gacaaccgta cggggatgct 
     2221 gacaacgagt tgccagctta ttctgcaatt ccttagtaat cattttctat cagtaaaatt 
     2281 aagttccatt agacgaggct tgcggccacg agcaaaagaa atatgaataa aacttcgata 
     2341 ttttatgagt tggtcaaatt taaaaggaga atcttttatc attgaaataa actcatcaac 
     2401 agaaaaataa agaggtttca aatcaatagc atcaccggtt aaatgctgag aagtcttagc 
     2461 accattacac tcattattct gtttttcagt acgaaaagcg gaagtaacag taaaatgaat 
     2521 attccggtgt agaagccact caacaaattt cattaattct ggattcatga cttacgaaaa 
     2581 tatttgagca atagacgtaa gaagactgac agcagccgca ataactgcag accaaatttt 
     2641 agatttagtt tcacttttca tgagaaattg ctttaaaagt tgaacattga gaaaaaataa 
     2701 gaatacagtc cggacgaagg tttgaagaga cgaaatcaga aacttcatca acaggaacaa 
     2761 gaacagtttc gcactgacta ggatttaact ttgattggat agaacacaaa taatactttt 
     2821 ccataaactt aaaaatttaa taaattagac atcgtttttt ttaagacaga acaaagataa 
     2881 gaataaagat ttgaaaaaaa caaatgctca tacaaattat taacataaat aaacaataaa 
     2941 atatgtgggt ggcaagctgg tctgtgagtt tgcgctataa agacaagggg agactgaaag 
     3001 cgatgaggta aatcgctttc cctacgggca aactcatgta ggtttcacca aattatattt 
     3061 taaggggtat agcggcgacg agaaagaagt gatttacgga aaattgctta cgcgttgcaa 
     3121 acgtcaagtt taaaggatga aagtactata acctacggtt tgaatttcag tcgacgaggt 
     3181 ctcccgaaat tcaggaggtg cataaccacg cttcgcgcgg ttgccggaag ttactccaaa 
     3241 caacaaaacc cggcacgtat cgaatacggc cgggtaaatg taaaaaaaag aatatcaacg 
     3301 acgaggaaag gtcttagaaa caatcctacg aggcaagaaa ttgcctataa tattaccgat 
     3361 attagtacca tattcaaccc atttatcagc atcataatac ttatatcttt tcttttcatt 
     3421 tctagaacgg taccattcct caatattctt actgcgagca ttatcctgag acaaaccaag 
     3481 cttgagttct tcattatgat aagcctcaga agattgatta gccgcaatat tggcagcaat 
     3541 ttgagattca gcaatacgag aagcaacctc attagaaatt ttttgaccac gagtccgagc 
     3601 agcagccaaa gcttcatcag ccaaagcttt tttagtttca gcataagaaa gatatccggc 
     3661 agacatgcgc tggtagtaat ccgcagcttt gacatttaaa tcaagctgct gttcttggtc 
     3721 aagatactta ttcaaaatgc ctttagcctc attatcgagg agcatgccag aacgctgagc 
     3781 acgcataata agaccggtca ttgccatgtt atcaacttct tgttgttcct taacgtaacc 
     3841 aagttgagca cgagctagtc cagtagacct caaataatta cgagtttcag cagtaaggtt 
     3901 tccccaatca atattagaaa gagtttccat ggctttggca tcagaaagct gcctagcacc 
     3961 ttgcaattga gacttttcag attgcatcaa atcatattga aaaatattac caatggaaga 
     4021 acctatgccg gaataatcag cctgaaaagg ctgcataacg gcatttccgg aagaagcagc 
     4081 agtagcacca ttaccagcag actgagcaac accagcagaa cctccattca tcattaaata 
     4141 aggatttaaa ccagcctcct cgagacgttg acgttgggca gaagcagtgt tataagcatt 
     4201 ttctttattc cacatatttt cctgccagtt gcgctgctgt atcgccatac gttcgttaaa 
     4261 ctggttattc atctgattaa tcttataatt catctggttg gtttcccgga cattttgtct 
     4321 attctgcgaa ttctgaaccg cagaagaacc aaggccaagg agaccaccag tgattgaacc 
     4381 aagaagaccc attactcagt agagggagca tcagcggaag cagcagcggg agcagcagcc 
     4441 gctttttctg cttcttgtct agcattttca gcatcaatca attcttgcgc ttgggactcg 
     4501 agattttcag cataagccga caactcctta gaccaggcaa taatctcaga aggagattga 
     4561 atataccgag aacgaattgt agccaaaagg tcctcatcgg acatagtatc cattatttgc 
     4621 tggatttgag aaataggctg tttactttgt ccaaacttag aagcaacagc aagaccagca 
     4681 cgagaggcaa ggtccttagt atgaagaatc aaacaaacat cagaagtata acgcacaggg 
     4741 cgagtttcgt cagtatcatc aatttctaca cgaagctgct cagtagaatc aaatttagga 
     4801 gcaacagcaa aggcatcagg ttcaacatta ggaataagcc cagaaccttg ttccaaacta 
     4861 ctcaaagaat taaattttcc aatcataaat aaaacaaact ttaataaggt acaccatcac 
     4921 gagacaaatt acggacaaca tagcaaccga tataagagtt aaccaataat tggtcagtat 
     4981 cccaagtaga atccgcattc acaccaaaaa ttggatcaag aacagaagga ttaaccttga 
     5041 agaacttgta attcataata accttagtat ccggggcagc atcatcttta ttgtatccaa 
     5101 aacaaaacca tccagaaagg agagattctg taacaggaga aacccaagat ttaagggtag 
     5161 tagtaaaagc tccattgata acatcaagct ttgttttcca attgaaataa cgggggttat 
     5221 aaccggcatt aaacaaatta acaatagaag ctttcggaga attgaaaact tgtgtcatag 
     5281 gaagaacctc cataccaatg ttatcaaact caggaatagg aagagattca gcatcggtta 
     5341 ccaataattg gccatcctgt ccagtaagtg tgtaatcaag cagaggaaca gcatgataaa 
     5401 tacacataac gacacaatgc tcagtagtag tatactcgaa agaaccgtta ccagcaccaa 
     5461 cacctttacc ggcaataaca gcagtatcac cttcagtggc aaggttattg ttaacaacct 
     5521 cactgatgtc aaggttacga gaaacaccac caatataggt acacatatta gaaagagctt 
     5581 ggggcaattt cacaccaaaa tgcttgcgaa tttgttcacg gtagtcacta tcaccagatt 
     5641 gactgatttc tttccaacgt tggagagctt cagcttgacg aagagcaaga acggtgaatt 
     5701 gagacttaag agatgataaa tcaagacgaa gcttggaatt tataggtata ggattttcag 
     5761 gagaagcatc aagtgcaaaa agggggaacg gagcagtttt agaagtgata gcagaggcaa 
     5821 taccaacaga actcttatgc gagtcagttc ccaaaacgac attagaatct cctgaatcag 
     5881 gaatatccaa aacagcaaca tctccaaatt gggaattagg aagaacaccc atcaacatat 
     5941 ccttgttcca attacaatat ttgaggtcaa acattgtacc agatttccaa tagtcaggag 
     6001 acacagaaag aagggaggaa attaaagagg gggaaactcc cgtaaaatag tccacattat 
     6061 aagaagaagg attagaagct tcccattgag accaacggaa aaaatcctga taaatctttt 
     6121 gataagcaag aagggggaaa agatttacat aattattctg aatactg 
//
