bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-11_CDS_annotation_glimmer3.pl_2_1
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 41.6 0.035
cpt:CpB0227 hypothetical protein 41.2 0.045
cpj:CPj0222 hypothetical protein 41.2 0.045
cpa:CP0543 hypothetical protein 41.2 0.045
cpn:CPn0222 hypothetical protein 41.2 0.045
llc:LACR_1419 hypothetical protein 42.4 0.083
sang:SAIN_1071 hypothetical protein 37.4 3.2
dosa:Os12t0502300-01 Os12g0502300; Similar to Cyclin A-like pr... 37.7 3.9
osa:4352280 Os12g0502300 37.7 3.9
sda:GGS_0930 hypothetical protein 36.2 9.3
sagm:BSA_10280 hypothetical protein 36.2 9.3
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 41.6 bits (96), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 52/112 (46%), Gaps = 12/112 (11%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWVVRMSEENRQTPNAYFLTLTIDDKSYKQLKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK Q
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQYGSLV 71
Query 86 KLKDNNDIATKAIRLCLERVR-KLTGKSVKHWFITELGHEKTERLHLHGIVW 136
KL ++L L+R+R +++ ++++ E G K +R H H +++
Sbjct 72 KLH---------LQLFLKRLRDRISPHKIRYFGCGEYG-TKLQRPHYHLLIF 113
> cpt:CpB0227 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/110 (31%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWVVRMSEENRQTPNAYFLTLTIDDKSYKQLKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK Q
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQYGSLV 71
Query 86 KLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
KL ++L L+R+RK+ +F K +R H H ++
Sbjct 72 KLH---------LQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/110 (31%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWVVRMSEENRQTPNAYFLTLTIDDKSYKQLKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK Q
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQYGSLV 71
Query 86 KLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
KL ++L L+R+RK+ +F K +R H H ++
Sbjct 72 KLH---------LQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/110 (31%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWVVRMSEENRQTPNAYFLTLTIDDKSYKQLKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK Q
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQYGSLV 71
Query 86 KLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
KL ++L L+R+RK+ +F K +R H H ++
Sbjct 72 KLH---------LQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 41.2 bits (95), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/110 (31%), Positives = 46/110 (42%), Gaps = 10/110 (9%)
Query 27 PDE-RLRYVTAACGDCYECRKQKQRQWVVRMSEENRQTPNAYFLTLTIDDKSYKQLKQKY 85
P+E R R+V C C CR Q + W R E FLTLT DDK Q
Sbjct 12 PEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEASLYEKNCFLTLTYDDKHLPQYGSLV 71
Query 86 KLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTERLHLHGIV 135
KL ++L L+R+RK+ +F K +R H H ++
Sbjct 72 KLH---------LQLFLKRLRKMISPHKIRYFECGAYGTKLQRPHYHLLL 112
> llc:LACR_1419 hypothetical protein
Length=284
Score = 42.4 bits (98), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 30/126 (24%)
Query 68 FLTLTIDDKSYKQLKQKYKLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTE 127
F TLT DD+ +Y A K ++ L+ +R+ G+ F+ EL H+ +E
Sbjct 72 FWTLTFDDRKVNARNYQY--------ARKRLQAWLKYMRETYGR-FGFLFVPEL-HKSSE 121
Query 128 RLHLHGIVWGLG-----------------NGEKITN--NWKYGI-TFTGYFVNEKTINYI 167
R+H HG+ G NG +I N WK G T + EK+ +YI
Sbjct 122 RIHFHGVTQGFSPPLVEARYPKNRRLIKRNGMQIYNAPRWKNGFSTVSRIQSKEKSASYI 181
Query 168 TKYMLK 173
TKY+ K
Sbjct 182 TKYISK 187
> sang:SAIN_1071 hypothetical protein
Length=288
Score = 37.4 bits (85), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 52/126 (41%), Gaps = 31/126 (25%)
Query 68 FLTLTIDDKSYKQLKQKYKLKDNNDIATKAIRLCLERVRKLTGKSVKHWFITELGHEKTE 127
F TLT DD Y A K +R L+ R+ GK ++ F+ EL K+
Sbjct 73 FWTLTFDDNKVDARDYPY--------AKKRLRAWLKYQREKYGK-FQYIFVAEL--HKSG 121
Query 128 RLHLHGIVWGLG-----------------NGEKITN--NWKYGITFTGYFVN-EKTINYI 167
R+H HG+ G G +I N WK G + + EKT NYI
Sbjct 122 RIHFHGLTAGFSPPLTEARSPKTNRLIKKKGLQIYNAETWKNGFSTVSKIQDREKTANYI 181
Query 168 TKYMLK 173
+KY+ K
Sbjct 182 SKYITK 187
> dosa:Os12t0502300-01 Os12g0502300; Similar to Cyclin A-like
protein (Fragment).
Length=490
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/154 (25%), Positives = 66/154 (43%), Gaps = 21/154 (14%)
Query 52 WVVRMSEENRQTPNAYFLTLTIDDKSYKQL---KQKYKLKDNND--IATKAIRLCLERVR 106
W+V +SEE + P+ +LT+ + D+ Q +QK +L IA+K +C RV
Sbjct 267 WLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKYEEICAPRVE 326
Query 107 KLTGKSVKHWFITELGHEKTERLHLHGIVWG-LGNGEKITNNWKYGITF-----TGYFVN 160
+ FIT+ + K E L + G+V +G + + F V
Sbjct 327 EF-------CFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVP 379
Query 161 EKTINYITKYMLK---IDEKHPKFRGKVLCSAGI 191
T+ Y+ Y+ + ID KF V+ ++ +
Sbjct 380 SITLGYLANYLAELTLIDYSFLKFLPSVVAASAV 413
> osa:4352280 Os12g0502300
Length=490
Score = 37.7 bits (86), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/154 (25%), Positives = 66/154 (43%), Gaps = 21/154 (14%)
Query 52 WVVRMSEENRQTPNAYFLTLTIDDKSYKQL---KQKYKLKDNND--IATKAIRLCLERVR 106
W+V +SEE + P+ +LT+ + D+ Q +QK +L IA+K +C RV
Sbjct 267 WLVEVSEEYKLVPDTLYLTINLIDRFLSQHYIERQKLQLLGITSMLIASKYEEICAPRVE 326
Query 107 KLTGKSVKHWFITELGHEKTERLHLHGIVWG-LGNGEKITNNWKYGITF-----TGYFVN 160
+ FIT+ + K E L + G+V +G + + F V
Sbjct 327 EF-------CFITDNTYTKAEVLKMEGLVLNDMGFHLSVPTTKTFLRRFLRAAQASRNVP 379
Query 161 EKTINYITKYMLK---IDEKHPKFRGKVLCSAGI 191
T+ Y+ Y+ + ID KF V+ ++ +
Sbjct 380 SITLGYLANYLAELTLIDYSFLKFLPSVVAASAV 413
> sda:GGS_0930 hypothetical protein
Length=272
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 55/128 (43%), Gaps = 35/128 (27%)
Query 68 FLTLTIDDKSYKQLKQKYKLKDNND--IATKAIRLCLERVRKLTGKSVKHWFITELGHEK 125
F TLT DD +++D I K IR L+ R+ GK ++ FI EL K
Sbjct 74 FWTLTFDDAKI----------NSHDYLIVKKKIRTWLKAQREKYGK-FRYIFIPEL--HK 120
Query 126 TERLHLHGIVWGLG-----------------NGEKITNNWKYGITF---TGYFVNEKTIN 165
RLH HG+ G NG+++ N Y + F T ++K N
Sbjct 121 NGRLHFHGVTGGFSPKLTKARNTKTGRLIKKNGKQVYNVDSYQLGFSTVTKIDSSKKVAN 180
Query 166 YITKYMLK 173
YITKY+ K
Sbjct 181 YITKYITK 188
> sagm:BSA_10280 hypothetical protein
Length=272
Score = 36.2 bits (82), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 55/128 (43%), Gaps = 35/128 (27%)
Query 68 FLTLTIDDKSYKQLKQKYKLKDNND--IATKAIRLCLERVRKLTGKSVKHWFITELGHEK 125
F TLT DD +++D I K IR L+ R+ GK ++ FI EL K
Sbjct 74 FWTLTFDDAKI----------NSHDYLIVKKKIRTWLKAQREKYGK-FRYIFIPEL--HK 120
Query 126 TERLHLHGIVWGLG-----------------NGEKITNNWKYGITF---TGYFVNEKTIN 165
RLH HG+ G NG+++ N Y + F T ++K N
Sbjct 121 NGRLHFHGVTGGFSPKLTKARNTKTGRLIKKNGKQVYNVDSYQLGFSTVTKIDSSKKVAN 180
Query 166 YITKYMLK 173
YITKY+ K
Sbjct 181 YITKYITK 188
Lambda K H a alpha
0.318 0.137 0.415 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 641302968415