bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-12_CDS_annotation_glimmer3.pl_2_8
Length=540
Score E
Sequences producing significant alignments: (Bits) Value
mch:Mchl_5208 ABC transporter 39.3 2.3
mex:Mext_4741 ABC transporter-like protein 39.3 2.4
mea:Mex_1p5196 ABC transporter ATPase/permease 38.9 3.0
mdi:METDI5795 ABC transporter ATPase/permease 38.9 3.0
hbo:Hbor_15680 glycine/d-amino acid oxidase, deaminating 37.4 7.6
vvu:VV1_1524 proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2) 37.0 7.6
> mch:Mchl_5208 ABC transporter
Length=663
Score = 39.3 bits (90), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 0/70 (0%)
Query 451 LNYMTNINRTFGNFAINDNEAFMVLNRNYEMSPSAGTNETKIADLTTYIDPVKYNYIFAE 510
LN+M I R I+ ++ F++L+RN E++ AG K+ T + V++ YI
Sbjct 350 LNFMGMIYREIKQALIDIDDMFLILHRNPEIADRAGAAPLKVEAGTVRFEDVRFAYIPER 409
Query 511 TNLDAMNFWV 520
L ++F V
Sbjct 410 PILRGVSFEV 419
> mex:Mext_4741 ABC transporter-like protein
Length=662
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 0/70 (0%)
Query 451 LNYMTNINRTFGNFAINDNEAFMVLNRNYEMSPSAGTNETKIADLTTYIDPVKYNYIFAE 510
LN+M I R I+ ++ F++L+RN E++ AG K+ T + V++ YI
Sbjct 349 LNFMGMIYREIKQALIDIDDMFLILHRNPEIADRAGAAPLKVEAGTVRFEDVRFAYIPER 408
Query 511 TNLDAMNFWV 520
L ++F V
Sbjct 409 PILRGVSFEV 418
> mea:Mex_1p5196 ABC transporter ATPase/permease
Length=661
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 0/70 (0%)
Query 451 LNYMTNINRTFGNFAINDNEAFMVLNRNYEMSPSAGTNETKIADLTTYIDPVKYNYIFAE 510
LN+M I R I+ ++ F++L+RN E++ AG K+ T + V++ YI
Sbjct 350 LNFMGMIYREIKQALIDIDDMFLILHRNPEIADRAGAPPLKVEAGTVRFEDVRFAYIPER 409
Query 511 TNLDAMNFWV 520
L ++F V
Sbjct 410 PILRGVSFEV 419
> mdi:METDI5795 ABC transporter ATPase/permease
Length=663
Score = 38.9 bits (89), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 0/70 (0%)
Query 451 LNYMTNINRTFGNFAINDNEAFMVLNRNYEMSPSAGTNETKIADLTTYIDPVKYNYIFAE 510
LN+M I R I+ ++ F++L+RN E++ AG K+ T + V++ YI
Sbjct 350 LNFMGMIYREIKQALIDIDDMFLILHRNPEIADRAGAPPLKVEAGTVRFEDVRFAYIPER 409
Query 511 TNLDAMNFWV 520
L ++F V
Sbjct 410 PILRGVSFEV 419
> hbo:Hbor_15680 glycine/d-amino acid oxidase, deaminating
Length=376
Score = 37.4 bits (85), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 20/72 (28%), Positives = 36/72 (50%), Gaps = 0/72 (0%)
Query 67 FDIFKNYYANTQEENFYIIGATETITNIKVTQAEGAIHTSTTPDKINIGIASGDSVEITP 126
+D+ +++ A Q + +++ I + + QA G + P + +A G TP
Sbjct 130 YDLPEDHRAVYQPDGGFLVPEQCIIAHTEAAQAAGGEIRAREPMRDFTPLADGGVRVTTP 189
Query 127 KNTYEADELIIT 138
K TYEAD L++T
Sbjct 190 KGTYEADRLVVT 201
> vvu:VV1_1524 proC; pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Length=272
Score = 37.0 bits (84), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 70/160 (44%), Gaps = 27/160 (17%)
Query 128 NTYEADELIITWFDMSTETTRTGKPTEFGTWSKTSGNWNVVMAPTQVG-LLMSITPKNRV 186
N Y AD++ T +ET R +FG + TS N +MA TQ +++S+ P+
Sbjct 25 NGYPADKITATA---PSETRRLPLEQQFGIQT-TSDN---LMAATQADVIVLSVKPQMME 77
Query 187 QLQDYPLEEIDEMRDKILSTKGNITSIPNNSNIALYDSFGKRLPNGKLNTTSSQYGLCL- 245
++ PL+ +D ++S I N +A + + +PN T SQ GL +
Sbjct 78 EVCK-PLQSVDFSNKLVISIAAGINCARLNDMLATQLNLVRVMPN-----TPSQLGLGMS 131
Query 246 ------------KTYNSDLLQNWINTEWIDGVNGISEVTA 273
+ + L+Q T W+D +GI+ V A
Sbjct 132 GLYAPASVAEQDRHFAEQLMQAVGKTCWVDEESGINHVIA 171
Lambda K H a alpha
0.315 0.132 0.393 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1207556411010