bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-15_CDS_annotation_glimmer3.pl_2_5

Length=82
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  mml:MLC_6270  dnaC; Replicative DNA helicase DnaC                   34.3    2.0
  mst:Msp_1084  cdcH; CdcH                                            32.3    9.5
  ava:Ava_C0200  hypothetical protein                                 32.3    9.7


> mml:MLC_6270  dnaC; Replicative DNA helicase DnaC
Length=437

 Score = 34.3 bits (77),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 17/49 (35%), Positives = 27/49 (55%), Gaps = 0/49 (0%)

Query  26   HLATEEKFKSEKAAQMQINKTNWDLVSALVYALKEADEWAEKNPELINQ  74
            +LA    FK  K A   +  +N  L++ L+  + + D  A KNP++INQ
Sbjct  215  NLALNAAFKEHKVALFSLEMSNEQLIARLLSRISKVDSLAFKNPKIINQ  263


> mst:Msp_1084  cdcH; CdcH
Length=730

 Score = 32.3 bits (72),  Expect = 9.5, Method: Compositional matrix adjust.
 Identities = 18/33 (55%), Positives = 19/33 (58%), Gaps = 3/33 (9%)

Query  41   MQINKTNWDLVSALVYA---LKEADEWAEKNPE  70
            +QI   NWD V  L  A   LKEA EW  KNPE
Sbjct  468  VQIPDVNWDDVGGLDDAKQELKEAIEWPLKNPE  500


> ava:Ava_C0200  hypothetical protein
Length=733

 Score = 32.3 bits (72),  Expect = 9.7, Method: Composition-based stats.
 Identities = 23/77 (30%), Positives = 40/77 (52%), Gaps = 15/77 (19%)

Query  1    MANLKEAFKIRLLPESE------EYVITIGSHLATEEKFKSEKAAQMQ--INKTNWDLVS  52
            +  LK   K+RL+  ++      +Y +  G  L+T+E+ + E+ A+MQ  ++  N  L++
Sbjct  647  IQELKRVTKLRLMALTQAKAKVRQYCVITGHILSTQERDRLEQRAKMQFYLDSGNETLIA  706

Query  53   ALVYALKEADEWAEKNP  69
                   EA EWA  NP
Sbjct  707  -------EAKEWATANP  716



Lambda      K        H        a         alpha
   0.307    0.123    0.334    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126649600922