bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-15_CDS_annotation_glimmer3.pl_2_8

Length=70
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  pmq:PM3016_5433  hypothetical protein                               32.3    5.2


> pmq:PM3016_5433  hypothetical protein
Length=192

 Score = 32.3 bits (72),  Expect = 5.2, Method: Compositional matrix adjust.
 Identities = 18/53 (34%), Positives = 27/53 (51%), Gaps = 0/53 (0%)

Query  1    MAATKFSVITTGNNPSFHMSIKELPAECTYKIAVTIAKAIVPKDERIIAVVES  53
            MA     V+  G N ++ M IK +P E  YKIA      +  ++ RI+ V +S
Sbjct  65   MAERGDLVVYDGRNAAYTMLIKSMPTEHDYKIANGFRFTLELEEARIVTVTQS  117



Lambda      K        H        a         alpha
   0.313    0.126    0.355    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 126668436524