bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-17_CDS_annotation_glimmer3.pl_2_5
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
xma:102228295 DNA topoisomerase 2-beta-like 43.1 0.16
pper:PRUPE_ppa020057mg hypothetical protein 40.8 0.38
ash:AL1_01540 Phage portal protein, SPP1 Gp6-like 39.7 1.5
cbk:CLL_A2281 hypothetical protein 38.9 1.8
smf:Smon_0998 diaminopimelate epimerase (EC:5.1.1.7) 38.5 2.7
ola:101157229 DNA topoisomerase 2-beta-like 38.5 4.4
tru:101075827 DNA topoisomerase 2-beta-like 38.5 4.6
wko:WKK_04485 xylose isomerase 37.7 5.7
daf:Desaf_2926 isoleucyl-tRNA synthetase 37.7 8.1
> xma:102228295 DNA topoisomerase 2-beta-like
Length=1603
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (43%), Gaps = 22/140 (16%)
Query 316 ILRAVHSTPARIARFGFIDYNQDSVLSLVRAYYQYLQSNSILSDDDKIILHNARCLTRFV 375
+L+ TPA I+ + +Y+ DS + V S L+ + + LH L +
Sbjct 953 MLQGTDKTPALISDYK--EYHTDSTVKFV-----VRMSEEKLAQAEAVGLHKVFKLQSSL 1005
Query 376 NCSSDV------------DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFI 423
C+S V ++ + + + L L+ YK ++W L S G+ SN+ RF+
Sbjct 1006 TCNSMVLFDHMGCLKRYDSVQDILKEFFELRLHYYKLRKDWLLGSLGAEASKLSNQARFV 1065
Query 424 ---IKTGIEYETKKNYESLR 440
I+ I E K E +R
Sbjct 1066 LEKIEGKISIENKSKRELIR 1085
> pper:PRUPE_ppa020057mg hypothetical protein
Length=236
Score = 40.8 bits (94), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/105 (29%), Positives = 49/105 (47%), Gaps = 11/105 (10%)
Query 395 LYVYKFFRNWHL------PSFGSNLDAYSNRIRFI--IKTGIEYETKKNYESLRDVFNIR 446
L +Y+F N L P+ LD + R I + G+ Y +Y + ++ +
Sbjct 25 LLIYEFMPNRSLDTHRFDPARRPELD-WGRRFNIIQCVARGLLYLHHDSYLKVSNILSDE 83
Query 447 SANPDISDCMFALPANGQERDVLSNVSRETVQLLEQLRYRSAAYC 491
+ NP ISD + AL G + L+N + L QLR++ +AYC
Sbjct 84 NVNPKISDFLLALIVQGTQH--LTNTQKIVGTLASQLRFQCSAYC 126
> ash:AL1_01540 Phage portal protein, SPP1 Gp6-like.
Length=496
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/111 (32%), Positives = 50/111 (45%), Gaps = 25/111 (23%)
Query 49 FGDEYHHYIPVS--------EYQCDDSSALRHIFFEQVQGTVPYDREIKEYVPVKDNWFL 100
FGD + Y + EY DS+ ++H +FE D EI+++ + W L
Sbjct 193 FGDRLYPYFDETGDMVAFSREYVVKDSAGVKHTYFETYT-----DTEIRKWTLTSNQWQL 247
Query 101 SIDAIRSFIHKTQALGKTDYPVAEQYGRDNLIPFLNYVDVQNYIKRLRKYL 151
+ + K Q +GK PV YGR P + + DVQN I RL K L
Sbjct 248 ----LDGYPKKNQ-IGK--IPVI--YGRQ---PAVEWEDVQNLIDRLEKLL 286
> cbk:CLL_A2281 hypothetical protein
Length=281
Score = 38.9 bits (89), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/126 (31%), Positives = 57/126 (45%), Gaps = 26/126 (21%)
Query 139 DVQNYIKRLRKYLFKVLGSYESLHFYAVG-EYGP---VHFRPHFHLLLFTNSDEVAEVLR 194
D+QNYI+RL+ Y K G E + Y++G E P R H HL++ +VAE L
Sbjct 121 DMQNYIRRLKHYR-KKNGMDELKYIYSIGFEENPDKSKKIRIHHHLIINKMDRDVAEDL- 178
Query 195 QCHDKSWKFGRSDFQR------SAGGSASYVSSYVNSLCSAPLLYRSCRAF-RPK-SRAS 246
W GR+D +R G A Y+++ P + + R +PK S +
Sbjct 179 ------WGKGRADCKRLKPNDFELTGVAKYIAN------QGPERWSASRNLKKPKISTSR 226
Query 247 VGFFEK 252
GF K
Sbjct 227 TGFTRK 232
> smf:Smon_0998 diaminopimelate epimerase (EC:5.1.1.7)
Length=260
Score = 38.5 bits (88), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 67/156 (43%), Gaps = 35/156 (22%)
Query 335 YNQDSVLSL-----VRAYYQYLQSNSILSDDDKIILHNARCL--TRFVNCSSD-----VD 382
YN D L+ +R Y YL +++++S DD+I++ + R +N D VD
Sbjct 55 YNADGSLAAMCGNGIRCYAHYLYNHNLVSKDDEILIDTLSGIKKIRIINTEKDNFLVSVD 114
Query 383 IESFINK--------LYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFIIKTGIEYETKK 434
+ + IN + R F Y+Y F H+ F +D F+ K G K
Sbjct 115 MNAAINTTEIKTIEAIDRTFKYIYTFTGTDHVVIF---VDKEELNEDFVTKYG------K 165
Query 435 NYESLRDVFNIRSANPDISDCMFALPANGQERDVLS 470
N E ++VF P ++ F N +E DV++
Sbjct 166 NIEQNKEVF------PKGTNVNFVYVKNREEVDVIT 195
> ola:101157229 DNA topoisomerase 2-beta-like
Length=1599
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 58/140 (41%), Gaps = 22/140 (16%)
Query 316 ILRAVHSTPARIARFGFIDYNQDSVLSLVRAYYQYLQSNSILSDDDKIILHNARCLTRFV 375
+L+ TPA I + +Y+ DS + V S L+ + + LH L +
Sbjct 953 MLQGTDKTPALINDYK--EYHTDSTVKFV-----VRMSEEKLAQAEAVGLHKVFKLQSSL 1005
Query 376 NCSSDV------------DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFI 423
C+S V ++ + + + L L+ K ++W L S G+ SN+ RF+
Sbjct 1006 TCNSMVLFDHMGCLKRYDSVQDILKEFFELRLHYCKLRKDWLLGSLGAEAAKLSNQARFV 1065
Query 424 ---IKTGIEYETKKNYESLR 440
I+ I E K E +R
Sbjct 1066 LEKIEGKISIENKSKRELIR 1085
> tru:101075827 DNA topoisomerase 2-beta-like
Length=1605
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 24/141 (17%)
Query 316 ILRAVHSTPARIARFGFIDYNQDSVLS-LVRAYYQYLQSNSILSDDDKIILHNARCLTRF 374
+L+ TPA I + +Y+ D+ + LVR S L+ + + LH L
Sbjct 953 MLQGSDKTPALINDYK--EYHTDTTVKFLVR------MSEEKLAQAESVGLHKVFKLQSS 1004
Query 375 VNCSSDV------------DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRF 422
+ C+S V ++ + + + L L+ YK ++W + S G+ SN+ RF
Sbjct 1005 LTCNSMVLFDHMGCMKRYESVQDILKEFFELRLHYYKLRKDWLVGSLGAEAAKLSNQARF 1064
Query 423 I---IKTGIEYETKKNYESLR 440
+ I+ + E K E +R
Sbjct 1065 VLEKIEGKVSIENKSKRELIR 1085
> wko:WKK_04485 xylose isomerase
Length=461
Score = 37.7 bits (86), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/44 (39%), Positives = 26/44 (59%), Gaps = 0/44 (0%)
Query 382 DIESFINKLYRLFLYVYKFFRNWHLPSFGSNLDAYSNRIRFIIK 425
DI+ F N +Y L +Y+F +N LP+ G N DA + R F ++
Sbjct 318 DIDEFPNDIYEATLVMYEFIKNGGLPTGGLNFDAKARRSSFTME 361
> daf:Desaf_2926 isoleucyl-tRNA synthetase
Length=939
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 28/128 (22%), Positives = 51/128 (40%), Gaps = 1/128 (1%)
Query 8 SAFKYSYFVTLTYDNEHIPLMRCKVLHSEYEDVVG-ISGDIHFGDEYHHYIPVSEYQCDD 66
++ K +Y V T IP +H EYE V+ + G++H +++ D
Sbjct 229 ASGKKAYLVIWTTTPWTIPSNMAVAVHPEYEYVLALVQGEVHVVASERLTALQKKFKWQD 288
Query 67 SSALRHIFFEQVQGTVPYDREIKEYVPVKDNWFLSIDAIRSFIHKTQALGKTDYPVAEQY 126
L + + ++G I PV ++++D +H G+ DY +Y
Sbjct 289 VEVLAVVTGKDLEGIKARHPFIDRVSPVVLADYVTLDTGTGLVHTAPGHGREDYETGLRY 348
Query 127 GRDNLIPF 134
G + L P
Sbjct 349 GLEVLSPL 356
Lambda K H a alpha
0.324 0.138 0.421 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1127183726201