bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-18_CDS_annotation_glimmer3.pl_2_1

Length=60
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  swi:Swit_0338  hypothetical protein                                 33.1    2.7
  mej:Q7A_1625  diguanylate cyclase                                   33.1    3.4
  sang:SAIN_0205  hypothetical protein                                31.6    5.6


> swi:Swit_0338  hypothetical protein
Length=395

 Score = 33.1 bits (74),  Expect = 2.7, Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 23/40 (58%), Gaps = 0/40 (0%)

Query  15   PYFSVVDVKHLSAVIDDAKARFGADSKIEVVMQTTEPYAP  54
            P+F   D +  ++ I+D +AR  AD ++ +V+   +P  P
Sbjct  287  PWFQTTDYRFHASSINDKQARRDADGRVRIVLSPRDPGVP  326


> mej:Q7A_1625  diguanylate cyclase
Length=596

 Score = 33.1 bits (74),  Expect = 3.4, Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 27/46 (59%), Gaps = 5/46 (11%)

Query  3    TQKEYIIVVNGRPYF-----SVVDVKHLSAVIDDAKARFGADSKIE  43
            T  EY ++VNG  Y+     + +D KH+ A I D  +R  A+SK+E
Sbjct  394  TTMEYPLMVNGEEYYFLERLTALDEKHVLACIIDITSRHEAESKLE  439


> sang:SAIN_0205  hypothetical protein
Length=162

 Score = 31.6 bits (70),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 8/48 (17%)

Query  13  GRPYFSVV-------DVKHLSAVIDDAKARFGADSKIEVVMQTTEPYA  53
           GR ++ V+       D+KHL+ ++D+ +  F  D ++E ++Q  EP A
Sbjct  54  GRQFYLVILRDEKTADIKHLAEILDEKRLSFANDKELEELLQ-VEPGA  100



Lambda      K        H        a         alpha
   0.314    0.133    0.371    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 125604996786