bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-19_CDS_annotation_glimmer3.pl_2_2
Length=109
Score E
Sequences producing significant alignments: (Bits) Value
prw:PsycPRwf_1803 rimO; 30S ribosomal protein S12 methylthiotr... 38.9 0.087
rsq:Rsph17025_0958 diacylglycerol kinase catalytic subunit 35.4 1.1
gwc:GWCH70_0298 glycine betain transporter substrate-binding p... 35.0 1.8
nmz:NMBNZ0533_0448 putative ABC transporter, periplasmic iron-... 34.7 2.1
nmm:NMBM01240149_0310 putative ABC transporter, periplasmic ir... 34.7 2.1
nmi:NMO_0287 fetB2; periplasmic binding protein, ABC transporter 34.7 2.1
nmp:NMBB_2145 putative ABC transporter, periplasmic solute-bin... 34.7 2.1
sho:SHJGH_5347 serine/threonine protein kinase 33.9 4.7
shy:SHJG_5584 serine/threonine protein kinase 33.9 4.8
saga:M5M_00305 hypothetical protein 33.5 5.4
azo:azo1377 folD; bifunctional 5,10-methylene-tetrahydrofolate... 33.5 5.7
nmh:NMBH4476_1821 putative ABC transporter, periplasmic iron-b... 33.5 6.2
nme:NMB1880 ABC transporter substrate-binding protein 33.5 6.2
rsk:RSKD131_1667 diacylglycerol kinase catalytic subunit 33.5 6.4
rba:RB5675 transcriptional regulator 33.1 6.6
rsh:Rsph17029_1982 diacylglycerol kinase catalytic subunit 33.1 6.8
rsp:RSP_0338 sphingosine/diacylglycerol kinase-like enzyme 33.1 6.8
cbr:CBG23140 Cbr-pqn-70; C. briggsae CBR-PQN-70 protein 32.7 9.6
> prw:PsycPRwf_1803 rimO; 30S ribosomal protein S12 methylthiotransferase
Length=524
Score = 38.9 bits (89), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 28/98 (29%), Positives = 41/98 (42%), Gaps = 18/98 (18%)
Query 3 KKKKITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDA 62
K K+ C KD+ +RD +P V V AH + +ST P+P A D
Sbjct 132 KNGKVIVTGCLGKDAQKIRDMHPAVLAVTGAHAYDEVIT------AVSTHAPMPQAIQDK 185
Query 63 ESIASGDVNVFTDPTVGKLDLMDMASTMASESESRALK 100
++ DP K+DL+D+A + S LK
Sbjct 186 KAY---------DP---KIDLIDLAGVKLTPSHYAYLK 211
> rsq:Rsph17025_0958 diacylglycerol kinase catalytic subunit
Length=306
Score = 35.4 bits (80), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (29%), Positives = 34/69 (49%), Gaps = 8/69 (12%)
Query 28 DKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMA 87
++ VV P+ + +N L+ ++ D AE +A+GD+ VF P G+L + A
Sbjct 184 EERVVRSPLVFVVNNAFQLEQMN--------LDGAERVAAGDLVVFIAPNTGRLGMFRNA 235
Query 88 STMASESES 96
+A S S
Sbjct 236 VALALGSAS 244
> gwc:GWCH70_0298 glycine betain transporter substrate-binding
protein
Length=300
Score = 35.0 bits (79), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query 26 FVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPT-VGKLDLM 84
F ++V++AH ++ YL DL + + L AF +++ GDV+++ + T G L+++
Sbjct 38 FTEQVILAHLLAEYLKANTDLD-VEMKDSLGGAFVLQQAMEKGDVDLYVEYTGTGHLNIL 96
> nmz:NMBNZ0533_0448 putative ABC transporter, periplasmic iron-binding
protein
Length=321
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGSRQLIQAAEQLKAAFEKAEPVAAG 319
> nmm:NMBM01240149_0310 putative ABC transporter, periplasmic
iron-binding protein
Length=321
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGSRQLIQAAEQLKAAFEKAEPVAAG 319
> nmi:NMO_0287 fetB2; periplasmic binding protein, ABC transporter
Length=321
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGSRQLIQAAEQLKAAFEKAEPVAAG 319
> nmp:NMBB_2145 putative ABC transporter, periplasmic solute-binding
protein
Length=321
Score = 34.7 bits (78), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (55%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF+ AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGSRQLIQAAEQLKAAFEKAEPVAAG 319
> sho:SHJGH_5347 serine/threonine protein kinase
Length=736
Score = 33.9 bits (76), Expect = 4.7, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (59%), Gaps = 1/41 (2%)
Query 48 GISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMAS 88
G + R PLPA D A + G+V V+ T G LD +DMAS
Sbjct 602 GATRRVPLPAVLDGAHATVHGNV-VYVLATGGSLDAVDMAS 641
> shy:SHJG_5584 serine/threonine protein kinase
Length=736
Score = 33.9 bits (76), Expect = 4.8, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 24/41 (59%), Gaps = 1/41 (2%)
Query 48 GISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMAS 88
G + R PLPA D A + G+V V+ T G LD +DMAS
Sbjct 602 GATRRVPLPAVLDGAHATVHGNV-VYVLATGGSLDAVDMAS 641
> saga:M5M_00305 hypothetical protein
Length=449
Score = 33.5 bits (75), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 3/65 (5%)
Query 43 GVDLQGISTRKPLPAAFDDA--ESIASGDVNVFTDPTVGKLDLMDMASTMASESESRALK 100
G D G R+ + AA DDA + +G+ N+++D +GK+++ S + S + + LK
Sbjct 362 GCDEYGTLARQMM-AAVDDAMFKYAFTGEQNIYSDKFLGKIEVDVEKSELLSSRQQKELK 420
Query 101 DGAKE 105
D KE
Sbjct 421 DACKE 425
> azo:azo1377 folD; bifunctional 5,10-methylene-tetrahydrofolate
dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase
(EC:1.5.1.5)
Length=291
Score = 33.5 bits (75), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 30/86 (35%), Positives = 44/86 (51%), Gaps = 8/86 (9%)
Query 1 MYKKKKITCPSCFSKDSSSLR-DYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAF 59
+Y + K+ +C SLR DY VD VV ++ LN + GI + PLP F
Sbjct 48 VYVRSKVA--ACEKAGIRSLRFDYPQDVDPAVVMEKLAA-LNADPSVHGILVQLPLPPQF 104
Query 60 DDA---ESIA-SGDVNVFTDPTVGKL 81
D+A E+I+ + DV+ F VG+L
Sbjct 105 DEAAVLEAISVAKDVDGFHAENVGRL 130
> nmh:NMBH4476_1821 putative ABC transporter, periplasmic iron-binding
protein
Length=321
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (53%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGARQLIQAAEQLKAAFKKAEPVAAG 319
> nme:NMB1880 ABC transporter substrate-binding protein
Length=321
Score = 33.5 bits (75), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (53%), Gaps = 0/53 (0%)
Query 16 DSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASG 68
D++ +R N + K ++ P + Y+ G Q I + L AAF AE +A+G
Sbjct 267 DNALVRGTNAWKRKQIIVMPAANYIVAGGARQLIQAAEQLKAAFKKAEPVAAG 319
> rsk:RSKD131_1667 diacylglycerol kinase catalytic subunit
Length=305
Score = 33.5 bits (75), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 33/64 (52%), Gaps = 8/64 (13%)
Query 28 DKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMA 87
++ +V P+ + +N L+ ++ D A+ IA+GD+ VF P G+L + A
Sbjct 183 EERLVRSPLVFVVNNAFQLEQMN--------LDGADRIAAGDLVVFIAPNTGRLGMFRNA 234
Query 88 STMA 91
+ +A
Sbjct 235 AALA 238
> rba:RB5675 transcriptional regulator
Length=259
Score = 33.1 bits (74), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 31/104 (30%), Positives = 45/104 (43%), Gaps = 15/104 (14%)
Query 4 KKKITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAE 63
K C CF S L D N F V++ + + G G+ + P F
Sbjct 2 KTSQNCTGCFLIASPYLHDGNFFRSVVLI---IRHTHEGAF---GVVINRAGPQRF---- 51
Query 64 SIASGDVNVFTDPTVGKLDLMDMASTMASESESRALKDGAKEPN 107
GDV +DP+ DM+S +AS++ES +L D A +PN
Sbjct 52 ----GDVIEMSDPSWQASSGPDMSSLLASQAESASLGD-ASDPN 90
> rsh:Rsph17029_1982 diacylglycerol kinase catalytic subunit
Length=305
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 33/64 (52%), Gaps = 8/64 (13%)
Query 28 DKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMA 87
++ +V P+ + +N L+ ++ D A+ IA+GD+ VF P G+L + A
Sbjct 183 EERLVRSPLVFVVNNAFQLEQMN--------LDGADRIAAGDLVVFIAPNTGRLGMFRNA 234
Query 88 STMA 91
+ +A
Sbjct 235 AALA 238
> rsp:RSP_0338 sphingosine/diacylglycerol kinase-like enzyme
Length=305
Score = 33.1 bits (74), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/64 (27%), Positives = 33/64 (52%), Gaps = 8/64 (13%)
Query 28 DKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDAESIASGDVNVFTDPTVGKLDLMDMA 87
++ +V P+ + +N L+ ++ D A+ IA+GD+ VF P G+L + A
Sbjct 183 EERLVRSPLVFVVNNAFQLEQMN--------LDGADRIAAGDLVVFIAPNTGRLGMFRNA 234
Query 88 STMA 91
+ +A
Sbjct 235 AALA 238
> cbr:CBG23140 Cbr-pqn-70; C. briggsae CBR-PQN-70 protein
Length=308
Score = 32.7 bits (73), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/69 (29%), Positives = 32/69 (46%), Gaps = 0/69 (0%)
Query 3 KKKKITCPSCFSKDSSSLRDYNPFVDKVVVAHPMSYYLNGGVDLQGISTRKPLPAAFDDA 62
KKKKI S F + ++NPF+D + A + Y V + GI R P+A +
Sbjct 137 KKKKIVLGSKFCDAKNIFLNFNPFIDFSLEATLLKIYWETVVTVTGIINRYNGPSANNVG 196
Query 63 ESIASGDVN 71
+ ++N
Sbjct 197 QGAIGANMN 205
Lambda K H a alpha
0.312 0.129 0.366 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 128814606656