bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-1_CDS_annotation_glimmer3.pl_2_1

Length=54
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  alt:ambt_14960  hypothetical protein                                33.1    2.6
  csu:CSUB_C0037  hypothetical protein                                31.6    10.0


> alt:ambt_14960  hypothetical protein
Length=568

 Score = 33.1 bits (74),  Expect = 2.6, Method: Composition-based stats.
 Identities = 17/52 (33%), Positives = 31/52 (60%), Gaps = 4/52 (8%)

Query  3   ATFVIGVITTLFVHSCTLSLSVAKNNTNSTQKTEQT----STSSVDSTRINI  50
           +T  + V T+LF+ +C+ +   A +  N+T+K  QT    ST  V+ +R++I
Sbjct  9   STLAVAVATSLFMSACSKAPEEAVSQANTTEKASQTVLPDSTLLVNESRLSI  60


> csu:CSUB_C0037  hypothetical protein
Length=486

 Score = 31.6 bits (70),  Expect = 10.0, Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (56%), Gaps = 2/54 (4%)

Query  1   LIATFVIGVI-TTLFVHSCTLSLSVAKNNTNSTQKTEQTSTSSVDSTRININSK  53
           +I+  V+GV+ TT F+H  T  ++  K     T  T QT+ S    TR+N+ +K
Sbjct  10  VISLLVVGVLATTTFLHPSTHQITSVKPGETDTHTTVQTAMSP-SMTRLNLIAK  62



Lambda      K        H        a         alpha
   0.311    0.120    0.308    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127911952116