bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-20_CDS_annotation_glimmer3.pl_2_1
Length=272
Score E
Sequences producing significant alignments: (Bits) Value
bta:520030 LAMB1; laminin, beta 1 38.5
mze:101467803 uncharacterized LOC101467803 37.0 4.6
bom:102278503 LAMB1; laminin, beta 1 37.0
elp:P12B_c2758 AYP/GTP-binding protein 35.8 8.9
> bta:520030 LAMB1; laminin, beta 1
Length=1786
Score = 38.5 bits (88), Expect = 1.8, Method: Composition-based stats.
Identities = 35/124 (28%), Positives = 66/124 (53%), Gaps = 17/124 (14%)
Query 24 KSQTLDKDLRERLMKAQAGLAEQGITESSSRASLNTAISLSYSIDNELKDAAIGYNLEMI 83
+++ L KD+ E++ + Q L++ + +S+ L+T + + S+DN +K+ A LE+I
Sbjct 1252 EAEKLTKDVTEKMAQVQVDLSDTAMQNNSTARQLDTLQAEAESLDNTVKELA--EQLELI 1309
Query 84 K-ADLGKAKEEYYQLKARTGYIDDQIEAELQLLTARALYLKSSSSNQEQLARVNELTADD 142
K +D+ A L + T Y +EAE ++ + SS+S E+ A LT D
Sbjct 1310 KNSDIRGA------LDSITKYFQMSLEAEERVNASTT----SSNSTVEESA----LTRDR 1355
Query 143 LENW 146
+E++
Sbjct 1356 VEDF 1359
> mze:101467803 uncharacterized LOC101467803
Length=890
Score = 37.0 bits (84), Expect = 4.6, Method: Composition-based stats.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (8%)
Query 54 RASLNTAISLSYS-IDNELKDAAIGYNLEMIKADLGKAKEEYYQLKARTGYIDDQIEAEL 112
R LN I Y+ + E KD + E+ K K K EY K +T D+Q E E
Sbjct 266 RMCLNRVIERKYTCLTAEDKDT---FRKELFKIPAEKNKLEYKGKKRKTPDADNQ-ELEA 321
Query 113 QLLTARALYLKSSSSNQEQLARVNELTADDLENWFDVNWNTKVQVPIINEKGKVERTVEM 172
Q+L + ++Q +++ E+ DDL V + T++Q E VE +
Sbjct 322 QMLAT-----NKRQTRKQQASKMEEMREDDLSYMCPVEFETELQSETEAEPENVEPESCL 376
Query 173 TGKEIRREYMK 183
+GKE+ ++
Sbjct 377 SGKEVEMNVLQ 387
> bom:102278503 LAMB1; laminin, beta 1
Length=1786
Score = 37.0 bits (84), Expect = 4.8, Method: Composition-based stats.
Identities = 31/124 (25%), Positives = 63/124 (51%), Gaps = 17/124 (14%)
Query 24 KSQTLDKDLRERLMKAQAGLAEQGITESSSRASLNTAISLSYSIDNELKDAAIGYNLEMI 83
+++ L KD+ E++ + + L++ + +S+ L+T + + S+DN +K+ A LE I
Sbjct 1252 EAEKLTKDVTEKMAQVEVDLSDTTMQNNSTARQLDTLQAEAESLDNTVKELA--EQLEFI 1309
Query 84 K-ADLGKAKEEYYQLKARTGYIDDQIEAELQLLTARALYLKSSSSNQEQLARVNELTADD 142
K +D+ A L + T Y +EAE + + +S++N + LT D
Sbjct 1310 KNSDIRGA------LDSITKYFQMSLEAEER--------VNASTTNSNSTVEESALTRDR 1355
Query 143 LENW 146
+E++
Sbjct 1356 VEDF 1359
> elp:P12B_c2758 AYP/GTP-binding protein
Length=606
Score = 35.8 bits (81), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 51/99 (52%), Gaps = 9/99 (9%)
Query 90 AKEEYYQLKARTGYIDDQIEAELQLLTARALYLKSSSSNQEQLARVNELTADDLENW-FD 148
A+ EY Q ++ Y + E+E++ L RA Y S N + V +D LEN
Sbjct 208 ARIEYKQSASKDSYFN--FESEIESLYDRAYYFGLISENSKNEPTV----SDKLENLKAI 261
Query 149 VNWNTKVQVPIINEKGKVERTVEMTGKEIR--REYMKLN 185
VN+ ++P INE+ K+E+ + + KE+ EY++ N
Sbjct 262 VNYKDINEIPAINERTKIEKELFLLKKELTDINEYIETN 300
Lambda K H a alpha
0.311 0.126 0.346 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 428088855330