bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Alejandro A. Schaffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Database: all_orgs 14,240,465 sequences; 5,121,972,263 total letters Query= Contig-20_CDS_annotation_glimmer3.pl_2_2 Length=135 Score E Sequences producing significant alignments: (Bits) Value dpp:DICPUDRAFT_42480 hypothetical protein 33.9 8.2 > dpp:DICPUDRAFT_42480 hypothetical protein Length=740 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 30/95 (32%), Positives = 47/95 (49%), Gaps = 11/95 (12%) Query 3 SKVITEDML----KSSGSVEKSIISVVISNYPLSNGGYLVSFSQEEPNG-----SFKSYD 53 +K++TE +L ++ G E I+S + NY L + ++S+S PN SFKS Sbjct 147 NKIVTEPVLSLIGQNIGYSESDIVSDIQFNYILKSNSIIISYSFYTPNRIIHEISFKSTG 206 Query 54 PSYSL--DFEASKLSTYLDYSSIFLPKGCYYLSDM 86 +SL D LS+ + I + KG YY D+ Sbjct 207 QKFSLTPDPYPPLLSSITSNNHILVFKGLYYSYDI 241 Lambda K H a alpha 0.311 0.128 0.343 0.792 4.96 Gapped Lambda K H a alpha sigma 0.267 0.0410 0.140 1.90 42.6 43.6 Effective search space used: 125245300132