bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-20_CDS_annotation_glimmer3.pl_2_3

Length=53
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  spo:SPBC14F5.03c  kap123; karyopherin Kap123                        32.3    5.5
  calo:Cal7507_4517  hypothetical protein                             29.6    7.4


> spo:SPBC14F5.03c  kap123; karyopherin Kap123
Length=1067

 Score = 32.3 bits (72),  Expect = 5.5, Method: Composition-based stats.
 Identities = 17/52 (33%), Positives = 28/52 (54%), Gaps = 3/52 (6%)

Query  1    VRKRVGKCFKVICRFRTYEQASEYLSFMTELYPGVYFDIKDVCRSYLDKESG  52
            VR        ++C+F T + +SEYL+ + +L P   F  ++V R+ LD   G
Sbjct  910  VRSNAAYSMGLLCQFSTEDLSSEYLNILQKLQP---FFTQEVFRTALDNAIG  958


> calo:Cal7507_4517  hypothetical protein
Length=61

 Score = 29.6 bits (65),  Expect = 7.4, Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 20/38 (53%), Gaps = 2/38 (5%)

Query  4   RVGKCFKVIC--RFRTYEQASEYLSFMTELYPGVYFDI  39
           R G   + IC  RFR+   A  Y+S +  L PGV F +
Sbjct  14  RCGSTLENICVTRFRSRTDAEAYMSILRGLSPGVRFQV  51



Lambda      K        H        a         alpha
   0.328    0.143    0.442    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 128296444671