bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-20_CDS_annotation_glimmer3.pl_2_4

Length=334
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  clp:CPK_ORF00729  hypothetical protein                              35.8    3.7
  cnc:CNE_1c31660  hypothetical protein                               37.4    3.7
  taz:TREAZ_3583  hypothetical protein                                37.4    4.4
  eol:Emtol_2312  ATP-dependent DNA helicase, RecQ family             37.4    5.0
  reh:H16_A3220  h16_A3220; hypothetical protein                      36.6    6.1


> clp:CPK_ORF00729  hypothetical protein
Length=121

 Score = 35.8 bits (81),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 25/114 (22%), Positives = 49/114 (43%), Gaps = 8/114 (7%)

Query  1    MNRPWDYFTQRIMVPCGRCEECLRQQRNEWYVRLERETKYQKSLHHNSVFVTITIAPEYY  60
            + +P +Y  + +++PC +C  C  Q    W  R   E     SL+  + F+T+T    Y 
Sbjct  9    LTQPEEYRNRWVLMPCLKCRFCRTQHAKVWSYRCVHEA----SLYEKNCFLTLT----YD  60

Query  61   DSALLNPSAFIRMWFERVRRRFGHSIKHAVFQEFGMHPEQGNEPRLHFHGVLWD  114
            D  L    + +++  +   +R    I     + FG         R H+H ++++
Sbjct  61   DKHLPQYGSLVKLHLQLFLKRLRDRISPHKIRYFGCGEYGTKLQRPHYHLLIFN  114


> cnc:CNE_1c31660  hypothetical protein
Length=280

 Score = 37.4 bits (85),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 18/63 (29%), Positives = 31/63 (49%), Gaps = 3/63 (5%)

Query  270  RVLRPSDFSRVVKGGFSRLVKLREFLSKVKARPSFLAVTSDVIDFWVDCFGIDSSNPFFN  329
            R L P+ F+    G    LV+  +  +K++A  S  A+ +++ DFW DC     + P  N
Sbjct  36   RPLSPATFAAFANGDGGELVERGDKPAKMRALHSSSALAANIFDFWTDC---ADATPLMN  92

Query  330  KIV  332
             + 
Sbjct  93   ALA  95


> taz:TREAZ_3583  hypothetical protein
Length=370

 Score = 37.4 bits (85),  Expect = 4.4, Method: Compositional matrix adjust.
 Identities = 27/85 (32%), Positives = 40/85 (47%), Gaps = 9/85 (11%)

Query  117  CSYNAIREAVKDLGFVWISSITDKRLRYVVKYVGKSVYMDERSADFAKSLPITVGKLKTN  176
            C Y   R+  KD G   I + TDK   Y  K +   +    R+ DF  +LP+  G  +T 
Sbjct  95   CGY---RKLAKDAGVELIDTQTDKARVYDCKGMKIEICDSARAVDFMINLPVMKGHCQTL  151

Query  177  LYDFLQNS------RYRRKFISAGV  195
            L   L+N+      R +R+F S G+
Sbjct  152  LTCALKNNKGIMPDREKRRFHSEGL  176


> eol:Emtol_2312  ATP-dependent DNA helicase, RecQ family
Length=636

 Score = 37.4 bits (85),  Expect = 5.0, Method: Compositional matrix adjust.
 Identities = 14/39 (36%), Positives = 24/39 (62%), Gaps = 0/39 (0%)

Query  6    DYFTQRIMVPCGRCEECLRQQRNEWYVRLERETKYQKSL  44
            +YF +     CG C+ CL+Q++ EW V +E   KY++ +
Sbjct  549  EYFNEFTNYTCGICDNCLKQKKQEWPVPIEVYAKYRQKI  587


> reh:H16_A3220  h16_A3220; hypothetical protein
Length=280

 Score = 36.6 bits (83),  Expect = 6.1, Method: Compositional matrix adjust.
 Identities = 18/63 (29%), Positives = 31/63 (49%), Gaps = 3/63 (5%)

Query  270  RVLRPSDFSRVVKGGFSRLVKLREFLSKVKARPSFLAVTSDVIDFWVDCFGIDSSNPFFN  329
            R L P+  +    G  S LV+  +  +K++A  S  A+ +++ DFW DC     + P  N
Sbjct  36   RPLSPATLAAFANGDGSELVERGDKPAKMRALHSSSALAANIFDFWTDC---ADATPLMN  92

Query  330  KIV  332
             + 
Sbjct  93   ALA  95



Lambda      K        H        a         alpha
   0.326    0.140    0.444    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 606891589622