bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_1
Length=523
Score E
Sequences producing significant alignments: (Bits) Value
clp:CPK_ORF00729 hypothetical protein 41.2 0.077
tsc:TSC_c05760 leucine-, isoleucine-, valine-, threonine-, and... 42.4 0.19
ttj:TTHA0451 branched-chain amino acid ABC transporter substra... 42.0 0.25
tth:TTC0082 leucine-, isoleucine-, valine-, threonine-, and al... 41.6 0.34
ttl:TtJL18_1630 branched-chain amino acid ABC transporter subs... 41.2 0.52
cpt:CpB0227 hypothetical protein 38.5 0.54
cpj:CPj0222 hypothetical protein 38.5 0.54
cpa:CP0543 hypothetical protein 38.5 0.54
cpn:CPn0222 hypothetical protein 38.5 0.54
pvu:PHAVU_001G149600g hypothetical protein 40.4 1.1
lay:LAB52_01950 transcriptional regulator 38.1 3.7
lam:LA2_02075 transcriptional regulator 38.1 3.7
lai:LAC30SC_01995 transcriptional regulator 38.1 3.7
gmx:100793183 mRNA-capping enzyme-like 38.5 4.4
afo:Afer_0101 phosphoenolpyruvate carboxylase (EC:4.1.1.31) 38.1 5.4
tts:Ththe16_0451 leucine-, isoleucine-, valine-, threonine-, a... 37.7 6.6
> clp:CPK_ORF00729 hypothetical protein
Length=121
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/49 (45%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query 140 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILLF 188
G L +QLF KRL I + KI Y+ GEYG RPH+H+L+F
Sbjct 68 GSLVKLHLQLFLKRLRDRI---SPHKIRYFGCGEYGTKLQRPHYHLLIF 113
> tsc:TSC_c05760 leucine-, isoleucine-, valine-, threonine-, and
alanine-binding protein
Length=398
Score = 42.4 bits (98), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/89 (33%), Positives = 40/89 (45%), Gaps = 16/89 (18%)
Query 128 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 180
R Y RP EN I +NY + L +R + + VTNE +Y +VG GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRVTNETVYQALVGMNGPNAFK 343
Query 181 PHFHILLFHDSKELRQSIRQFVSKSWRFG 209
P F + +Q I +KS R G
Sbjct 344 PGFAV-------STKQGIEIDFTKSERTG 365
> ttj:TTHA0451 branched-chain amino acid ABC transporter substrate-binding
protein
Length=407
Score = 42.0 bits (97), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/65 (34%), Positives = 32/65 (49%), Gaps = 9/65 (14%)
Query 128 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 180
R Y RP EN I +NY + L +R + + +TNE +Y +VG GP F+
Sbjct 295 RKYGRP--ENFIESVNYTNGMLVASIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFK 352
Query 181 PHFHI 185
P F +
Sbjct 353 PGFAV 357
> tth:TTC0082 leucine-, isoleucine-, valine-, threonine-, and
alanine-binding protein
Length=398
Score = 41.6 bits (96), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/65 (34%), Positives = 32/65 (49%), Gaps = 9/65 (14%)
Query 128 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 180
R Y RP EN I +NY + L +R + + +TNE +Y +VG GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIVGMNGPNAFK 343
Query 181 PHFHI 185
P F +
Sbjct 344 PGFAV 348
> ttl:TtJL18_1630 branched-chain amino acid ABC transporter substrate-binding
protein
Length=398
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (14%)
Query 128 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 180
R Y RP EN I +NY + L +R + + +TNE +Y ++G GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIIGMNGPNAFK 343
Query 181 PHFHI 185
P F +
Sbjct 344 PGFAV 348
> cpt:CpB0227 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 140 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 187
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpj:CPj0222 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 140 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 187
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpa:CP0543 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 140 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 187
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> cpn:CPn0222 hypothetical protein
Length=113
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 21/48 (44%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query 140 GYLNYRDMQLFFKRLNQNIRSVTNEKIYYYVVGEYGPTTFRPHFHILL 187
G L +QLF KRL + I + KI Y+ G YG RPH+H+LL
Sbjct 68 GSLVKLHLQLFLKRLRKMI---SPHKIRYFECGAYGTKLQRPHYHLLL 112
> pvu:PHAVU_001G149600g hypothetical protein
Length=679
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 6/74 (8%)
Query 46 ITLTYSTEYLPVGEFYKGASGEVRFRCLPRDFVYSYKTVQGYNRNISFNDEYFDFDTQLS 105
I LT +T Y P+ ++ K G V+ RC RD V ++V+ F DE DF +Q +
Sbjct 145 IDLTNTTRYYPLSDWTKEGIGHVKIRCKGRDAVPDDESVK------QFCDEVQDFCSQRT 198
Query 106 WESAQLLQKKTHLH 119
E +L TH H
Sbjct 199 NEKKYILVHCTHGH 212
> lay:LAB52_01950 transcriptional regulator
Length=269
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/190 (26%), Positives = 87/190 (46%), Gaps = 40/190 (21%)
Query 269 EEIFSLFYDGRMLELNG-KPTLVRPKRSHINRLYPRLNKSKHASVDDDIRVATALSNIPH 327
+++F L D R +++N + ++ KR+ +N L +L K+ + DI++A A +
Sbjct 45 KDLFELL-DARKIDVNNFRKKIIDKKRNSLNELADQLTKAFYKP---DIKLAKA---VKE 97
Query 328 VLAKFGFIDEV-----------------TDFEMSKRIYYLIRRYLEIDHTLKYAPEQLRL 370
LA F +E+ T E+S ++ Y E D T P+ LR+
Sbjct 98 QLADFSDAEELQIRAELVVAVLTNNLKETKQELSAKLI----NYFERDATWMDDPDMLRI 153
Query 371 IYNSCRLSLYINFSDESGCSAVYRLLLNYRNLVNNWITAPVGSVAFTGQLRYAVRSIHSF 430
I NS R+ + NF + + +LL+ Y+ ++ + P+ + G + V +H
Sbjct 154 IGNSTRV-IDFNFL----ATLMNKLLVKYQK-IDQY---PLDTQKRIGNI--FVNYLHVL 202
Query 431 YDYCAKRSLR 440
YDY AKR R
Sbjct 203 YDYRAKRMAR 212
> lam:LA2_02075 transcriptional regulator
Length=269
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/190 (26%), Positives = 87/190 (46%), Gaps = 40/190 (21%)
Query 269 EEIFSLFYDGRMLELNG-KPTLVRPKRSHINRLYPRLNKSKHASVDDDIRVATALSNIPH 327
+++F L D R +++N + ++ KR+ +N L +L K+ + DI++A A +
Sbjct 45 KDLFELL-DARKIDVNNFRKKIIDKKRNSLNELADQLTKAFYKP---DIKLAKA---VKE 97
Query 328 VLAKFGFIDEV-----------------TDFEMSKRIYYLIRRYLEIDHTLKYAPEQLRL 370
LA F +E+ T E+S ++ Y E D T P+ LR+
Sbjct 98 QLADFSDAEELQIRAELVVAVLTNNLKETKQELSAKLI----NYFERDATWMDDPDMLRI 153
Query 371 IYNSCRLSLYINFSDESGCSAVYRLLLNYRNLVNNWITAPVGSVAFTGQLRYAVRSIHSF 430
I NS R+ + NF + + +LL+ Y+ ++ + P+ + G + V +H
Sbjct 154 IGNSTRV-IDFNFL----ATLMNKLLVKYQK-IDQY---PLDTQKRIGNI--FVNYLHVL 202
Query 431 YDYCAKRSLR 440
YDY AKR R
Sbjct 203 YDYRAKRMAR 212
> lai:LAC30SC_01995 transcriptional regulator
Length=269
Score = 38.1 bits (87), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 49/190 (26%), Positives = 87/190 (46%), Gaps = 40/190 (21%)
Query 269 EEIFSLFYDGRMLELNG-KPTLVRPKRSHINRLYPRLNKSKHASVDDDIRVATALSNIPH 327
+++F L D R +++N + ++ KR+ +N L +L K+ + DI++A A +
Sbjct 45 KDLFELL-DARKIDVNNFRKKIIDKKRNSLNELADQLTKAFYKP---DIKLAKA---VKE 97
Query 328 VLAKFGFIDEV-----------------TDFEMSKRIYYLIRRYLEIDHTLKYAPEQLRL 370
LA F +E+ T E+S ++ Y E D T P+ LR+
Sbjct 98 QLADFSDAEELQIRAELVVAVLTNNLKETKQELSAKLI----NYFERDATWMDDPDMLRI 153
Query 371 IYNSCRLSLYINFSDESGCSAVYRLLLNYRNLVNNWITAPVGSVAFTGQLRYAVRSIHSF 430
I NS R+ + NF + + +LL+ Y+ ++ + P+ + G + V +H
Sbjct 154 IGNSTRV-IDFNFL----ATLMNKLLVKYQK-IDQY---PLDTQKRIGNI--FVNYLHVL 202
Query 431 YDYCAKRSLR 440
YDY AKR R
Sbjct 203 YDYRAKRMAR 212
> gmx:100793183 mRNA-capping enzyme-like
Length=645
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/74 (34%), Positives = 36/74 (49%), Gaps = 6/74 (8%)
Query 46 ITLTYSTEYLPVGEFYKGASGEVRFRCLPRDFVYSYKTVQGYNRNISFNDEYFDFDTQLS 105
I LT +T Y PV ++ K G V+ RC RD V ++V+ F D+ DF +Q +
Sbjct 100 IDLTNTTRYYPVSDWTKEGIGHVKIRCTGRDAVPDDESVK------FFCDKVLDFCSQRT 153
Query 106 WESAQLLQKKTHLH 119
+L TH H
Sbjct 154 NTKKYILVHCTHGH 167
> afo:Afer_0101 phosphoenolpyruvate carboxylase (EC:4.1.1.31)
Length=772
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 23/68 (34%), Positives = 30/68 (44%), Gaps = 0/68 (0%)
Query 205 SWRFGDTDTQPVWSSASCYVAGYVNSTACLPDFYKNFSHIKPFGRFSMHFAESAFNEVFK 264
SW GD D P+ ++ A N+TACL F +K SMHFA + V
Sbjct 126 SWIGGDRDGNPLVTAEVTKAAFVANATACLEAFRSRLDAVKRRLTHSMHFAAVSDAIVES 185
Query 265 PQEDEEIF 272
+ DE F
Sbjct 186 IRNDEHDF 193
> tts:Ththe16_0451 leucine-, isoleucine-, valine-, threonine-,
and alanine-binding protein
Length=398
Score = 37.7 bits (86), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 20/65 (31%), Positives = 31/65 (48%), Gaps = 9/65 (14%)
Query 128 RIYNRPYMENLIGYLNYRDMQLF-------FKRLNQNIRSVTNEKIYYYVVGEYGPTTFR 180
R Y RP EN I +NY + L +R + + +TNE +Y ++G GP F+
Sbjct 286 RKYGRP--ENFIESVNYTNGMLAAAIAVEAIRRAQERFKRITNETVYQAIIGMNGPNAFK 343
Query 181 PHFHI 185
F +
Sbjct 344 SGFAV 348
Lambda K H a alpha
0.323 0.138 0.424 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1164039869837