bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_4
Length=626
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 44.3 0.074
mre:K649_09280 inner-membrane translocator 39.3 2.5
mrb:Mrub_2652 inner-membrane translocator 39.3 2.5
acm:AciX9_4424 aldehyde dehydrogenase 38.9 3.3
atr:s00033p00207620 AMTR_s00033p00207620; hypothetical protein 37.0 9.8
> fve:101314332 capsid protein VP1-like
Length=421
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 84/382 (22%), Positives = 128/382 (34%), Gaps = 91/382 (24%)
Query 41 FCLPADKFNISQEWFARTQPVDTSAFTRIREYYEWFFVPLHLLYRNSNEAIMSMENQPNY 100
LP D FN++ F R + +FFVP L++ N + M Q N
Sbjct 76 LVLPGDTFNVNVTMFGRLATPIFPVMDNLHLDSFFFFVPNRLVW---NNWVKFMGEQDNP 132
Query 101 AASSSASISFNRNLPWIDLATINTAIGNVQSSASPNNFFGVLRSEGFKKLVSYLGYGETS 160
A S S SI SP + V L Y G
Sbjct 133 ADSISYSIP---------------------QQVSPAGGYAV------GSLQDYFGLPTAG 165
Query 161 PEKYVDNLRCSALPLYAYQKIYQDYYRHSQWEKSKPWTYNCDFWNGEDSTPVASSLDLFS 220
+ + SALP+ AY IY ++R + S D +G D+TP +
Sbjct 166 QVGVSNTVSHSALPVRAYNLIYNQWFRDENLQNS----VVVDKGDGPDTTPSTN------ 215
Query 221 QNPNDSVFELRYANWNKDLWMGSLPNSQFGDVAAVSLGLDASTMKIGVTGTADVSGMMGV 280
+ L D + +LP Q G A ++ +G + SG G
Sbjct 216 -------YTLLRRGKRHDYFTSALPWPQKGGTAV--------SLPLGTSAPIAFSGASG- 259
Query 281 VYGDVNGYASDYAAGIRDGGINGAPDNGQTATAYPSGNLPSDYPYFYAKGSSKTPVGSIA 340
D G +T GNL + Y+ GS + A
Sbjct 260 ------------------------SDVGVISTT--QGNLIKN---MYSTGSGTSLKIGSA 290
Query 341 NPAHISGSDLNAQVSGQLNAQFSVLQLRAAEALQKWKEIAQANGQNYAAQVKAHFGVSTN 400
A +DL+A + +N QLR + +QK E G Y +++HFGV++
Sbjct 291 TVATGLYADLSAATAATIN------QLRQSFQIQKLLERDARGGTRYTEIIRSHFGVASP 344
Query 401 PMQAHRSTRICGFDGSIDISAV 422
+ R + G I+I+ +
Sbjct 345 DARLQRPEYLGGGSTPINIAPI 366
> mre:K649_09280 inner-membrane translocator
Length=477
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/80 (33%), Positives = 38/80 (48%), Gaps = 15/80 (19%)
Query 248 QFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYGDVNGYASDYAAGIRDGGINGAPDN 307
Q G AA++LGL+ + +G G D+ G+A+ +A G GI G+P
Sbjct 124 QIGIFAALALGLN---VVVGQAGLLDL------------GFAAFFAIGAYTWGIFGSPQA 168
Query 308 GQTATAYPSGNLPSDYPYFY 327
Q YPS LP +Y Y +
Sbjct 169 AQFIPGYPSEGLPGNYLYLF 188
> mrb:Mrub_2652 inner-membrane translocator
Length=477
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/80 (33%), Positives = 38/80 (48%), Gaps = 15/80 (19%)
Query 248 QFGDVAAVSLGLDASTMKIGVTGTADVSGMMGVVYGDVNGYASDYAAGIRDGGINGAPDN 307
Q G AA++LGL+ + +G G D+ G+A+ +A G GI G+P
Sbjct 124 QIGIFAALALGLN---VVVGQAGLLDL------------GFAAFFAIGAYTWGIFGSPQA 168
Query 308 GQTATAYPSGNLPSDYPYFY 327
Q YPS LP +Y Y +
Sbjct 169 AQFIPGYPSEGLPGNYLYLF 188
> acm:AciX9_4424 aldehyde dehydrogenase
Length=455
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (45%), Gaps = 2/96 (2%)
Query 72 YYEWFFVPLHLLYR--NSNEAIMSMENQPNYAASSSASISFNRNLPWIDLATINTAIGNV 129
YY+ FF P+ L++R N +EAI + P S + R N
Sbjct 357 YYQEFFAPVALIFRVKNEHEAIRLANDSPYGLGGSVITTDIVRGKHIASQIETGMVFINQ 416
Query 130 QSSASPNNFFGVLRSEGFKKLVSYLGYGETSPEKYV 165
+ +PN FG +++ G+ + +S LG GE +K V
Sbjct 417 ATWTAPNLPFGGIKNSGYGRELSDLGIGEFINKKLV 452
> atr:s00033p00207620 AMTR_s00033p00207620; hypothetical protein
Length=310
Score = 37.0 bits (84), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 54/128 (42%), Gaps = 19/128 (15%)
Query 63 TSAFTRIREYYEWFFVPLHLLYRNSNEAIMS---------MENQPNYAASSSASISFNRN 113
T +F R+R Y +P H + + N + M E+ S S S+N+N
Sbjct 178 TGSFRRMRAY-----IPKHQMLHSRNPSQMQNSKGLPKDWKEDMHKVHQLFSKSPSYNKN 232
Query 114 LPWIDLATINTAIGNVQSSASPNNFFGVLRSEGFKKLVSYLGYGETSPEKYVDNLRCSAL 173
+L + ++Q AS NF V++ E +K V L G+ KYV + R
Sbjct 233 SKCYELDFRERSRSDIQIQASAKNFQLVMQGENGRKCVLLL--GKIGKSKYVMDYR---F 287
Query 174 PLYAYQKI 181
PL YQ +
Sbjct 288 PLSGYQAL 295
Lambda K H a alpha
0.317 0.132 0.407 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1460574899040