bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-26_CDS_annotation_glimmer3.pl_2_1

Length=567
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  cmk:103182439  lrrn2; leucine rich repeat neuronal 2                37.4


> cmk:103182439  lrrn2; leucine rich repeat neuronal 2
Length=716

 Score = 37.4 bits (85),  Expect = 9.9, Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query  89   VTLFTESSALTENNTFCLSSFANINGVWTKGADIKNTEKGTVTLGVGNYVGFSINEDVPR  148
            + L  E + LTE +  C S   N+  ++     +     G    G+ N +   +N +  R
Sbjct  117  LVLHLEENQLTELSEDCFSGLTNLQELYLNHNQLSTISAGAFR-GLQNLLRLHLNSNRLR  175

Query  149  GLE----------EIVINGRISFSLNNVVHEFTGQSIKYLIDNKI-LKEI-DYKKASIPN  196
             L+          EI++ G  +  +   ++  T  +++ L+   + L+EI DY    + N
Sbjct  176  NLDRLWFEAVPRLEILMVGENTVDVIQDMNFRTLTNLRSLVLTGMGLREISDYALEGLEN  235

Query  197  LKTFIFYENKTTETSTFKIEKIIRLGSKNAVYNKYPLKRIDD  238
            L +  FY+NK        ++K+   G K    NK P++RI  
Sbjct  236  LDSISFYDNKLVTVPRMALQKVP--GLKFLDLNKNPIQRIQQ  275



Lambda      K        H        a         alpha
   0.317    0.136    0.403    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1290098241636