bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-27_CDS_annotation_glimmer3.pl_2_4

Length=347
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101314332  capsid protein VP1-like                              44.3    0.029
  caa:Caka_0380  sugar transporter                                    37.0    5.9


> fve:101314332  capsid protein VP1-like
Length=421

 Score = 44.3 bits (103),  Expect = 0.029, Method: Compositional matrix adjust.
 Identities = 47/154 (31%), Positives = 65/154 (42%), Gaps = 15/154 (10%)

Query  6    QSDAYTTALAAPQQD--VVPLVGLTTYETVSVNEAGHTVTTVNTAIVDEEGNAYKVDFES  63
            + D +T+AL  PQ+    V L   T+        +G  V  ++T     +GN  K +  S
Sbjct  224  RHDYFTSALPWPQKGGTAVSLPLGTSAPIAFSGASGSDVGVISTT----QGNLIK-NMYS  278

Query  64   NGDALKGVNYTPLKAGEAVNMQSLVSPV--ASGISINDFRNVNAYQRYLELNQFRGFSYK  121
             G        T LK G A     L + +  A+  +IN  R     Q+ LE +   G  Y 
Sbjct  279  TGSG------TSLKIGSATVATGLYADLSAATAATINQLRQSFQIQKLLERDARGGTRYT  332

Query  122  EIIEGRFDVNVRYDALNMPEYLGGITRDIIVNPI  155
            EII   F V      L  PEYLGG +  I + PI
Sbjct  333  EIIRSHFGVASPDARLQRPEYLGGGSTPINIAPI  366


> caa:Caka_0380  sugar transporter
Length=520

 Score = 37.0 bits (84),  Expect = 5.9, Method: Compositional matrix adjust.
 Identities = 40/164 (24%), Positives = 73/164 (45%), Gaps = 26/164 (16%)

Query  119  SYKEIIEGRFDVNVRYDALNMPE-YLGGIT----RDIIVNPITQTVETTDSGSY------  167
            SY  ++  RF   + + +L++   Y+G I     R  +V+     +    SG+Y      
Sbjct  96   SYWGLVSARFLGGLAFCSLSLASMYIGEIAPVKWRGRLVSINQMNIVFGLSGAYFINYFI  155

Query  168  VGSLGSQAGLATCFGNSDGSISVFCDEESIVMGIMYVMPMPVYDSIL------PKWLTYR  221
            + ++GS++ LAT    S+ +       E        ++P   + S+L      P+WL YR
Sbjct  156  IQAIGSESQLATSLNLSETAWRYMLGSE--------IIPAIAWFSLLFFIPESPRWLVYR  207

Query  222  ERLDSFNPEFDHIGYQPIYLKELAAIQ-AFESGKDLNTVFGYQR  264
             R+D        I  +    +E+A+IQ +FE G +  +V+   R
Sbjct  208  GRVDEAKVILRGILPETSVDQEIASIQESFEHGHETKSVWSQLR  251



Lambda      K        H        a         alpha
   0.318    0.135    0.396    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 647559582741