bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-28_CDS_annotation_glimmer3.pl_2_2
Length=536
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 59.7 8e-07
bfs:BF9343_0396 hypothetical protein 37.4 8.2
aba:Acid345_1709 beta-lactamase-like protein 37.0 9.4
cpi:Cpin_2772 hypothetical protein 37.4 9.4
> fve:101314332 capsid protein VP1-like
Length=421
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 65/216 (30%), Positives = 93/216 (43%), Gaps = 29/216 (13%)
Query 136 IKISAYPFRAYEAVYNAYIRNTRNNPFILNGKKTYNRFITNDAGGADSLTPKS---LFYA 192
+ SA P RAY +YN + R+ + N + + G D+ TP + L
Sbjct 173 VSHSALPVRAYNLIYNQWFRD----------ENLQNSVVVDKGDGPDT-TPSTNYTLLRR 221
Query 193 NWQSDAYTSALTAPQQG-IAPLVGLTTYETKSINEA-GHEVTVVNTAIVDEDGNAFKVDF 250
+ D +TSAL PQ+G A + L T + + A G +V V++T GN K +
Sbjct 222 GKRHDYFTSALPWPQKGGTAVSLPLGTSAPIAFSGASGSDVGVISTT----QGNLIK-NM 276
Query 251 ESNGEALKGVNYTPLKAGEALNMQSLVSPVTSGIS--INDFRNVNAYQRYLELNQFRGFS 308
S G T LK G A L + +++ + IN R Q+ LE + G
Sbjct 277 YSTGSG------TSLKIGSATVATGLYADLSAATAATINQLRQSFQIQKLLERDARGGTR 330
Query 309 YKEIIEGRFDVNVRYDALNMPEYLGGITRDIVVNPI 344
Y EII F V L PEYLGG + I + PI
Sbjct 331 YTEIIRSHFGVASPDARLQRPEYLGGGSTPINIAPI 366
> bfs:BF9343_0396 hypothetical protein
Length=373
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 29/113 (26%), Positives = 51/113 (45%), Gaps = 8/113 (7%)
Query 121 GVTPYYGVGSTDHKAI--KISAYPFRAYEAVYNAYIRNTRNNPFILNGKKTYNRFITNDA 178
G PYY + D + ++ ++P EA AY + T + +L +Y + I ND
Sbjct 161 GGAPYYLMFLKDENTLITELQSFPLNDKEATLPAYQKRTLDTNKLLKSFSSYKKSIRNDE 220
Query 179 GGADSLTPKSLFYANWQSDAYTSALTAPQQGIAPLVGLTTYETKSINEAGHEV 231
S+ P+S FY+N DA T Q + L L + ++ + +G+ +
Sbjct 221 A---SILPESFFYSN---DAIKPDGTKVVQAMVHLAQLNILDLETGHVSGYRL 267
> aba:Acid345_1709 beta-lactamase-like protein
Length=353
Score = 37.0 bits (84), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 62/141 (44%), Gaps = 11/141 (8%)
Query 371 GNTDGSISVFCDEESIVI-GVMHVIPMP-VYDSLLPKWLTYRERLDSFNPEFDHIGYQPI 428
GNT+G VF E IV+ G + V P+P +YD +W+T E+L + + G+ P+
Sbjct 213 GNTEGDAIVFLPREKIVVAGDLVVYPLPYIYDGYPSEWVTTLEKLAQLDWQTIIPGHGPV 272
Query 429 YVRELAAVQAR----QFNVDPMTVFGYQRPWYEYVQKPDRAHGLFLSSLRNFIMYRSFVD 484
+ + + VQ + +D M Q + G+ LSS R R D
Sbjct 273 -MHDKSFVQLEHDLLRSALDQMDAVLVQNGPALSLTLDQVKPGINLSSFRQ----RFAGD 327
Query 485 VPELGKDFTTMKPGDVNNVFS 505
P+LG F M V +FS
Sbjct 328 DPDLGASFDDMTAELVKAMFS 348
> cpi:Cpin_2772 hypothetical protein
Length=1460
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 26/116 (22%)
Query 400 DSLLPKWLTYRERLDSFNPEFD-----HIGYQPIY--VRELAAVQARQFNVDPMTVFGYQ 452
D P W+ ++ R D+ N FD +I + V E V +V P
Sbjct 714 DDSAPAWVQFKMRYDNVNSTFDANMKTYINIMGVLKGVNERGLVGEAALHVGP------- 766
Query 453 RPWYEYVQKPDRAHGLFLSSL---RNFIMYRSFV-DVPELGKDFTTMKPGDVNNVF 504
WY Y+ +P + GL ++ L R++ M S V D+P L P +VN VF
Sbjct 767 DDWYFYIGRPSQMFGLSIAGLAEVRSYFMMGSRVEDMPPL--------PSEVNEVF 814
Lambda K H a alpha
0.319 0.136 0.404 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1195327991658