bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-29_CDS_annotation_glimmer3.pl_2_1
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
abe:ARB_07482 hypothetical protein 39.3 2.8
tve:TRV_03684 hypothetical protein 38.9 3.4
fve:101314332 capsid protein VP1-like 38.9 3.5
dpb:BABL1_877 Ankyrin repeats containing protein 37.4 7.5
> abe:ARB_07482 hypothetical protein
Length=724
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query 152 TLSQWSNADTYLAYWDIVRNYYGYSQWGLYSFAWPMANKLVFSS--SVYTLDPDNSGDSR 209
T S+ AD+ L V ++ + F + +++ +S S L PD+
Sbjct 411 TFSKLVGADSAL-----VDTLSSLERFAMEHFESLVRDRVKAASNDSAGLLPPDDLSPPE 465
Query 210 FFTQCYGNLEFLDAFYESQFYPSSLNSSNNTFNRGNLFFQIVRSDLKSGGATSDGYPVVS 269
+FT+C +LE L Y+S F + LN S GN F I+RS L P++
Sbjct 466 YFTECIESLEQLMKAYDSSFSHAVLNKSFGEGEEGNEFTPILRSTLD---------PMLD 516
Query 270 -TYPSTNLL 277
T STNLL
Sbjct 517 LTRKSTNLL 525
> tve:TRV_03684 hypothetical protein
Length=724
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 17/129 (13%)
Query 152 TLSQWSNADTYLAYWDIVRNYYGYSQWGLYSFAWPMANKLVFSS--SVYTLDPDNSGDSR 209
T S+ AD+ L V ++ + F + +++ +S S L PD+
Sbjct 411 TFSKLVGADSAL-----VDTLSSLERFAMEHFESLVRDRVKTASNDSAGLLPPDDLSPPE 465
Query 210 FFTQCYGNLEFLDAFYESQFYPSSLNSSNNTFNRGNLFFQIVRSDLKSGGATSDGYPVVS 269
+FT+C +LE L Y+S F + LN S GN F I+RS L P++
Sbjct 466 YFTECIESLEQLMKAYDSSFSHAVLNKSFGEGEEGNEFTPILRSTLD---------PMLD 516
Query 270 -TYPSTNLL 277
T STNLL
Sbjct 517 LTRKSTNLL 525
> fve:101314332 capsid protein VP1-like
Length=421
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/129 (26%), Positives = 58/129 (45%), Gaps = 7/129 (5%)
Query 318 SRLVPVGSSSAVSMTGVTTIPQLAIASRLQEYKDLLGAGGSRYSDWLETFF--ASKIEHV 375
S V G + +S TI QL + ++Q+ + GG+RY++ + + F AS +
Sbjct 289 SATVATGLYADLSAATAATINQLRQSFQIQKLLERDARGGTRYTEIIRSHFGVASPDARL 348
Query 376 DRPKLLFSASQTVNVQIVMNQAGDNNFSGNQPLGQQGGSIAFNERLGRRQSY--YFREPG 433
RP+ L S +N+ + G P QG AF + + + F E G
Sbjct 349 QRPEYLGGGSTPINIAPIAQTGGTGAQGTTTP---QGNLAAFGTYMAKGHGFSQSFVEHG 405
Query 434 YLIDMLSIR 442
++I ++S+R
Sbjct 406 HVIGLVSVR 414
> dpb:BABL1_877 Ankyrin repeats containing protein
Length=312
Score = 37.4 bits (85), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 26/118 (22%), Positives = 53/118 (45%), Gaps = 12/118 (10%)
Query 210 FFTQCYGNLEFLDAFYESQFYPSSLNSSNNTFNRGNLFFQIVRSDLKSGGATSDGYPVVS 269
F G E++D+ + + Y SL + F+R + + + SDLK ++
Sbjct 64 IFNPLNGIKEYIDSIADQEIYKKSLIETAKIFSRKHFIQEKINSDLK---------KILE 114
Query 270 TY-PSTNLLGTTGLISQTLPSTSSSASSGLAYFLVAHPMAVVPSNPDRFSRLVPVGSS 326
Y P ++ +I P+ S + G + + P+ ++ S ++F +LVP+ +S
Sbjct 115 NYSPENEIIAAMLIIEGADPNISVNFKVGTQNYTL--PVIIMISITNKFKKLVPLLAS 170
Lambda K H a alpha
0.318 0.133 0.405 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1375374696596