bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-35_CDS_annotation_glimmer3.pl_2_1

Length=174
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  cqu:CpipJ_CPIJ009090  hypothetical protein                          35.8    4.4
  mme:Marme_3360  flagellar rod assembly protein/muramidase FlgJ      34.7    9.7


> cqu:CpipJ_CPIJ009090  hypothetical protein
Length=561

 Score = 35.8 bits (81),  Expect = 4.4, Method: Composition-based stats.
 Identities = 17/40 (43%), Positives = 28/40 (70%), Gaps = 1/40 (3%)

Query  32   QLLVTNIEDLPIPEFDNIGMEAVPVVQLVNSSLLSTNIGK  71
            Q LVT IE+LP P  +   + + P+++L+NS+  ST+IG+
Sbjct  290  QFLVTTIENLPEPSSET-PVSSSPIIELINSTENSTSIGE  328


> mme:Marme_3360  flagellar rod assembly protein/muramidase FlgJ
Length=338

 Score = 34.7 bits (78),  Expect = 9.7, Method: Compositional matrix adjust.
 Identities = 14/32 (44%), Positives = 20/32 (63%), Gaps = 0/32 (0%)

Query  126  YPFFKVNPNTLDNIFAVKADSTWATDQLLVNC  157
            YP  K + N   N+F +KADS W+ D+ +VN 
Sbjct  225  YPIAKEDGNASFNLFGIKADSRWSGDKAVVNT  256



Lambda      K        H        a         alpha
   0.321    0.139    0.440    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 143911319772