bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-38_CDS_annotation_glimmer3.pl_2_1
Length=229
Score E
Sequences producing significant alignments: (Bits) Value
nii:Nit79A3_1233 methane monooxygenase/ammonia monooxygenase s... 39.7 0.27
nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase su... 39.7 0.29
nit:NAL212_1386 methane monooxygenase/ammonia monooxygenase su... 39.7 0.29
nit:NAL212_0797 methane monooxygenase/ammonia monooxygenase su... 39.7 0.29
nit:NAL212_2818 methane monooxygenase/ammonia monooxygenase su... 39.3 0.47
nit:NAL212_2303 methane monooxygenase/ammonia monooxygenase su... 38.9 0.60
nii:Nit79A3_2886 methane monooxygenase/ammonia monooxygenase s... 38.5 0.74
nii:Nit79A3_1595 methane monooxygenase/ammonia monooxygenase s... 38.5 0.74
nii:Nit79A3_1079 methane monooxygenase/ammonia monooxygenase s... 38.5 0.74
nii:Nit79A3_0471 methane monooxygenase/ammonia monooxygenase s... 38.5 0.74
lrc:LOCK908_2979 Adhesion exoprotein 38.1 1.4
lrl:LC705_02890 adhesion exoprotein 38.1 1.4
lro:LOCK900_2893 Hypothetical protein 38.1 1.8
lio:JL53_09880 adenylosuccinate lyase (EC:4.3.2.2) 36.2 5.4
lia:JL58_09415 adenylosuccinate lyase (EC:4.3.2.2) 36.2 5.4
sto:ST1004 hypothetical protein 35.8 7.3
lrg:LRHM_2815 putative cell surface protein 35.8 7.5
lrh:LGG_02923 adhesion exoprotein 35.8 7.5
pse:NH8B_0682 bifunctional isocitrate dehydrogenase kinase/pho... 35.4 9.1
lra:LRHK_3009 LPXTG-motif cell wall anchor domain-containing p... 35.8 9.3
amr:AM1_D0201 rpoD; RNA polymerase sigma-70 factor 35.0 9.7
pif:PITG_01088 sporangia induced dynein heavy chain 35.8 9.9
> nii:Nit79A3_1233 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 35/64 (55%), Gaps = 0/64 (0%)
Query 51 LGSKSGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHYQPE 110
+ + G G S + ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTGASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 111 FDRI 114
FD++
Sbjct 61 FDKV 64
> nit:NAL212_2606 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (6%)
Query 48 AEALGSKSGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHY 107
A G+ SG A S + ++ ++ D + Y IG+LT+ V I+ + F Y+ +D
Sbjct 2 ATTYGTTSGAA----SANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSM 57
Query 108 QPEFDRI 114
+PEFD++
Sbjct 58 EPEFDKV 64
> nit:NAL212_1386 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (6%)
Query 48 AEALGSKSGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHY 107
A G+ SG A S + ++ ++ D + Y IG+LT+ V I+ + F Y+ +D
Sbjct 2 ATTYGTTSGAA----SANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSM 57
Query 108 QPEFDRI 114
+PEFD++
Sbjct 58 EPEFDKV 64
> nit:NAL212_0797 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 39.7 bits (91), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 4/67 (6%)
Query 48 AEALGSKSGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHY 107
A G+ SG A S + ++ ++ D + Y IG+LT+ V I+ + F Y+ +D
Sbjct 2 ATTYGTTSGAA----SANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSM 57
Query 108 QPEFDRI 114
+PEFD++
Sbjct 58 EPEFDKV 64
> nit:NAL212_2818 methane monooxygenase/ammonia monooxygenase
subunit C
Length=295
Score = 39.3 bits (90), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 12/92 (13%)
Query 23 ISRELSMRTVEQTVDQQSTSSQGQYAEALGSKSGIAGVYGSTSNNIEVFCDEESYIIGLL 82
I+ L + ++Q D +T+ G+ SG A S + ++ ++ D + Y +G+L
Sbjct 11 INNYLRIFLIKQMEDMMATTY--------GTTSGAA----SANYDMSLWYDSKYYKLGML 58
Query 83 TVTPVPIYTQMLSKDFLYNGLLDHYQPEFDRI 114
T+ V I+ + F Y+ +D +PEFD++
Sbjct 59 TMLLVAIFWIWYQRTFAYSHGMDSMEPEFDKV 90
> nit:NAL212_2303 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.9 bits (89), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 20/67 (30%), Positives = 37/67 (55%), Gaps = 4/67 (6%)
Query 48 AEALGSKSGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHY 107
A G+ SG A S + ++ ++ D + Y +G+LT+ V I+ + F Y+ +D
Sbjct 2 ATTYGTTSGAA----SANYDMSLWYDSKYYKLGMLTMLLVAIFWIWYQRTFAYSHGMDSM 57
Query 108 QPEFDRI 114
+PEFD++
Sbjct 58 EPEFDKV 64
> nii:Nit79A3_2886 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 57 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHYQPE 110
+A YG+TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 111 FDRI 114
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_1595 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 57 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHYQPE 110
+A YG+TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 111 FDRI 114
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_1079 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 57 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHYQPE 110
+A YG+TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 111 FDRI 114
FD++
Sbjct 61 FDKV 64
> nii:Nit79A3_0471 methane monooxygenase/ammonia monooxygenase
subunit C
Length=269
Score = 38.5 bits (88), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 36/64 (56%), Gaps = 6/64 (9%)
Query 57 IAGVYGSTSN------NIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNGLLDHYQPE 110
+A YG+TS ++ ++ D + Y IG+LT+ V I+ + F Y+ +D +PE
Sbjct 1 MATTYGTTSASSSANYDMSLWYDSKYYKIGMLTMLLVAIFWIWYQRTFAYSHGMDSMEPE 60
Query 111 FDRI 114
FD++
Sbjct 61 FDKV 64
> lrc:LOCK908_2979 Adhesion exoprotein
Length=2299
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 26/105 (25%), Positives = 47/105 (45%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI +++ E+TVD S G+Y+ L S +G
Sbjct 873 DVSFEYDGKTKASEAKGIQATVTLGETEKTVDLTSADIVVENDGVDAGKYSYQL-SDAGK 931
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + ++G +T+TP + F Y+G
Sbjct 932 AKLQAATGNNYQLTADDLAKVMGTITITPAAVTADSNDVSFEYDG 976
> lrl:LC705_02890 adhesion exoprotein
Length=2299
Score = 38.1 bits (87), Expect = 1.4, Method: Composition-based stats.
Identities = 26/105 (25%), Positives = 47/105 (45%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI +++ E+TVD S G+Y+ L S +G
Sbjct 873 DVSFEYDGKTKASEAKGIQATVTLGETEKTVDLTSADIVVENDGVDAGKYSYQL-SDAGK 931
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + ++G +T+TP + F Y+G
Sbjct 932 AKLQAATGNNYQLTADDLAKVMGTITITPAAVTADSNDVSFEYDG 976
> lro:LOCK900_2893 Hypothetical protein
Length=2619
Score = 38.1 bits (87), Expect = 1.8, Method: Composition-based stats.
Identities = 29/105 (28%), Positives = 46/105 (44%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI + + E+TVD S + GQY+ L S +G
Sbjct 1961 DVSFEYDGKTKASEAKGIQVIVKLGETEKTVDLTSADIVVANDDVNAGQYSYQL-SDAGK 2019
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + I G +T+TP + F YNG
Sbjct 2020 AKLQAATGNNYQLTADDLAKITGTITITPAVATADSNNVSFEYNG 2064
> lio:JL53_09880 adenylosuccinate lyase (EC:4.3.2.2)
Length=430
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/46 (46%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query 52 GSKSGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKD 97
G SG G Y NI+ F ESY+ G L TP PI TQ L +D
Sbjct 178 GKISGAVGTYA----NIDPFV--ESYVCGKLGTTPAPISTQTLQRD 217
> lia:JL58_09415 adenylosuccinate lyase (EC:4.3.2.2)
Length=430
Score = 36.2 bits (82), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/46 (46%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query 52 GSKSGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKD 97
G SG G Y NI+ F ESY+ G L TP PI TQ L +D
Sbjct 178 GKISGAVGTYA----NIDPFV--ESYVCGKLGTTPAPISTQTLQRD 217
> sto:ST1004 hypothetical protein
Length=474
Score = 35.8 bits (81), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/52 (35%), Positives = 29/52 (56%), Gaps = 1/52 (2%)
Query 123 EVCPLNLGVAD-TVNKANQTFGYQRPWYEYVAKYDSAHGLFRTNMKNFVMSR 173
+ P LG A T+N+ NQT Y +P+ ++ Y+ HG+ +T K F+ R
Sbjct 112 NISPSLLGFASYTINEGNQTIAYIQPFTITISPYNITHGIGKTVTKLFIKPR 163
> lrg:LRHM_2815 putative cell surface protein
Length=2603
Score = 35.8 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 28/105 (27%), Positives = 45/105 (43%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI + + E+TVD S + G Y+ L S +G
Sbjct 1963 DVSFEYDGKTKASEAKGIQVIVKLGETEKTVDLTSADIVVANDDVNAGHYSYQL-SDAGK 2021
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + I G +T+TP + F YNG
Sbjct 2022 AKLQAATGNNYQLTADDLAKITGTITITPAVATADSNNVSFEYNG 2066
Score = 35.4 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 27/105 (26%), Positives = 45/105 (43%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI + + E+TVD S + GQY+ L S +G
Sbjct 1867 DVSFEYDGKTKAGEAKGIQVTVKLGETEKTVDLTSADIVVANDDVNAGQYSYQL-SDAGK 1925
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + + G +T+TP F Y+G
Sbjct 1926 AKLQAATGNNYQLTADDLAKVTGTITITPAVTTADSNDVSFEYDG 1970
> lrh:LGG_02923 adhesion exoprotein
Length=2603
Score = 35.8 bits (81), Expect = 7.5, Method: Composition-based stats.
Identities = 28/105 (27%), Positives = 45/105 (43%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI + + E+TVD S + G Y+ L S +G
Sbjct 1963 DVSFEYDGKTKASEAKGIQVIVKLGETEKTVDLTSADIVVANDDVNAGHYSYQL-SDAGK 2021
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + I G +T+TP + F YNG
Sbjct 2022 AKLQAATGNNYQLTADDLAKITGTITITPAVATADSNNVSFEYNG 2066
Score = 35.4 bits (80), Expect = 9.9, Method: Composition-based stats.
Identities = 27/105 (26%), Positives = 45/105 (43%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI + + E+TVD S + GQY+ L S +G
Sbjct 1867 DVSFEYDGKTKAGEAKGIQVTVKLGETEKTVDLTSADIVVANDDVNAGQYSYQL-SDAGK 1925
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + + G +T+TP F Y+G
Sbjct 1926 AKLQAATGNNYQLTADDLAKVTGTITITPAVTTADSNDVSFEYDG 1970
> pse:NH8B_0682 bifunctional isocitrate dehydrogenase kinase/phosphatase
protein
Length=600
Score = 35.4 bits (80), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 28/124 (23%), Positives = 59/124 (48%), Gaps = 14/124 (11%)
Query 38 QQSTSSQGQYAEALGSK--SGIAGVYGSTSNNIEVFCDEESYIIGLLTVTPVP------- 88
QQ+ + Q+ + S+ + + V+ + + E++ + Y IGLLT P
Sbjct 49 QQAIRDRIQFYDERVSETVARLHTVFHAELLDDEIWQQAKLYFIGLLTNHKQPECAETFF 108
Query 89 --IYTQMLSKDFLYNGLLDHYQPEF--DRIGFQPITYKEVCPLNLGVADTVNKANQTFGY 144
++T++L +D+ N + +P + I P +Y+ PL G+ + + + FG+
Sbjct 109 NSVFTRILHRDYFNNDFI-FVRPAISTEYIEADPPSYRSYYPLQYGLRPVLRQIVRDFGW 167
Query 145 QRPW 148
+RP+
Sbjct 168 KRPF 171
> lra:LRHK_3009 LPXTG-motif cell wall anchor domain-containing
protein
Length=2299
Score = 35.8 bits (81), Expect = 9.3, Method: Composition-based stats.
Identities = 25/105 (24%), Positives = 46/105 (44%), Gaps = 9/105 (9%)
Query 6 DIDIRFDELLMPEFIGGISRELSMRTVEQTVDQQSTS--------SQGQYAEALGSKSGI 57
D+ +D GI +++ E+TVD S G+Y+ L +G
Sbjct 873 DVSFEYDGKTKASEAKGIQATVTLGETEKTVDLTSADIVVENDGVDAGKYSYQL-IDAGK 931
Query 58 AGVYGSTSNNIEVFCDEESYIIGLLTVTPVPIYTQMLSKDFLYNG 102
A + +T NN ++ D+ + ++G +T+TP + F Y+G
Sbjct 932 AKLQAATGNNYQLTADDLAKVMGTITITPAAVTADSNDVSFEYDG 976
> amr:AM1_D0201 rpoD; RNA polymerase sigma-70 factor
Length=299
Score = 35.0 bits (79), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 36/157 (23%), Positives = 61/157 (39%), Gaps = 11/157 (7%)
Query 20 IGGISRELSMRTVEQTVDQQSTSSQGQYAEALGSKSGIAGVYGSTSNNIEVFCDEESYII 79
I + RELS Q+ + G E L A + S NI V D+E +
Sbjct 150 IKRVRRELSQTLGRTPTHQEMVAELGITLEQLQKTLQAAQISNPESLNIRVGKDQEMELG 209
Query 80 GLLTVTPVPIYTQMLSKDFLYNGLLDHYQPEFDRIGFQPITYKEVCPLNLGVAD----TV 135
LL +P +++ +DFL N L D + V L G+ D ++
Sbjct 210 DLLEDLQMPSPNEVVEQDFLRNALWSALAQLND-------NERTVLILRYGLEDGRERSL 262
Query 136 NKANQTFGYQRPWYEYVAKYDSAHGLFRTNMKNFVMS 172
+ +Q G R W + + + L N+++F+ +
Sbjct 263 YRVSQQMGISREWVRKLEQTAKSKLLQSGNLQDFMAA 299
> pif:PITG_01088 sporangia induced dynein heavy chain
Length=4101
Score = 35.8 bits (81), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 4/102 (4%)
Query 26 ELSMRTVEQTVDQQSTSSQGQYAEALGSKSGIAGVYGSTSNNIEVFCDEESYIIGLLT-V 84
E R ++ +D Q +S G E L + T NIE + +Y+ G+ + +
Sbjct 610 EKHRRLAKKLLDLQLKNSTGLAKELLEKFEMVNRQLQKTPQNIEELTEMNAYLEGVSSQI 669
Query 85 TPVPIYTQMLSKDFLYNGLLDHYQPEFDRIGFQPITYKEVCP 126
P+ +Q L K Y +LD+ Q +DR F I +CP
Sbjct 670 APLLTQSQQLVK---YRLVLDYLQYPYDRDDFMTIWKVRLCP 708
Lambda K H a alpha
0.321 0.138 0.409 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 300753891872