bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-3_CDS_annotation_glimmer3.pl_2_3
Length=598
Score E
Sequences producing significant alignments: (Bits) Value
ggo:101142148 AMPH; amphiphysin isoform 1 38.5
mcc:704559 AMPH; amphiphysin 38.1 6.4
mtt:Ftrac_1072 xanthan lyase xalb 38.1 7.0
mcf:102127478 AMPH; amphiphysin 37.7 8.6
ppp:PHYPADRAFT_171461 hypothetical protein 37.7 9.7
> ggo:101142148 AMPH; amphiphysin isoform 1
Length=695
Score = 38.5 bits (88), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 14/137 (10%)
Query 252 DMFMGVFPDTQFGDVATIGITSDSPESSLQLKAWASGSPSSKAPVVVGAAASSPNFTIRA 311
++ +G P GD A G TS++PE + + K P+ AP + A+ + R
Sbjct 558 EITIGAEPKETTGDAAPPGPTSETPELATEQKPIQDPQPTPSAPAM---GAADQLASARE 614
Query 312 ESGNMNPANILGVDTSSLSLAGSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVD 371
S + P + V+T A + D L L+RG ++ L VP + A A + V
Sbjct 615 ASQELPPGFLYKVETLHDFEAANSDELTLQRG-------DVVLVVPSDSEADQDAGWLVG 667
Query 372 VGE----NMSGMSTYVG 384
V E ++TY G
Sbjct 668 VKESDWLQYRDLATYKG 684
> mcc:704559 AMPH; amphiphysin
Length=652
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (44%), Gaps = 14/137 (10%)
Query 252 DMFMGVFPDTQFGDVATIGITSDSPESSLQLKAWASGSPSSKAPVVVGAAASSPNFTIRA 311
++ +G P+ D A +G TS++PE + + K P AP + A + ++R
Sbjct 515 EITIGAEPEETTEDTAPLGPTSETPELATEPKPLQDPQPMPSAPALGTADQLA---SVRE 571
Query 312 ESGNMNPANILGVDTSSLSLAGSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVD 371
S + P + V+T A + D L L+RG ++ L VP + A A + V
Sbjct 572 ASQELPPGFLYKVETLHDFEAANSDELTLQRG-------DVVLVVPSDSEADQDAGWLVG 624
Query 372 VGE----NMSGMSTYVG 384
V E ++TY G
Sbjct 625 VKESDWLQYRDLATYKG 641
> mtt:Ftrac_1072 xanthan lyase xalb
Length=1110
Score = 38.1 bits (87), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 53/124 (43%), Gaps = 8/124 (6%)
Query 47 FTLKRQHFTRTQPVNTSAYTRIREYYDWFWVPLHLLWRHAPEVISQMQSNVQ------HA 100
+ KR F T P+ +AYT++ E + + P + W I Q+ +Q A
Sbjct 556 YPFKRLQFVET-PLQFAAYTKVYETHQAYLQPETVFWPEKGGDIRQLDLRMQLRDMNNQA 614
Query 101 GSQTSSLTLGNYLPTISSSQLSAVCSRLFGKKNYF-GYDRSDLSYKLMQYLRVGNSGQVS 159
SQ +LT + + + V ++ G F GY++ D +Y + N+G VS
Sbjct 615 KSQNQTLTDKQKQANVFNDLIKRVITKQIGANYTFDGYNQDDANYSIFPNYYTYNTGFVS 674
Query 160 VNFG 163
+G
Sbjct 675 EEWG 678
> mcf:102127478 AMPH; amphiphysin
Length=694
Score = 37.7 bits (86), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 60/137 (44%), Gaps = 14/137 (10%)
Query 252 DMFMGVFPDTQFGDVATIGITSDSPESSLQLKAWASGSPSSKAPVVVGAAASSPNFTIRA 311
++ +G P+ D A +G TS++PE + + K P AP + A + ++R
Sbjct 557 EITIGAEPEETTEDTAPLGPTSETPELATEPKPLQDPQPMPSAPALGTADQLA---SVRE 613
Query 312 ESGNMNPANILGVDTSSLSLAGSFDVLALRRGEALQRWKEISLNVPQNYRAQIKAHFGVD 371
S + P + V+T A + D L L+RG ++ L VP + A A + V
Sbjct 614 ASQELPPGFLYKVETLHDFEAANSDELTLQRG-------DVVLVVPSDSEADQDAGWLVG 666
Query 372 VGE----NMSGMSTYVG 384
V E ++TY G
Sbjct 667 VKESDWLQYRDLATYKG 683
> ppp:PHYPADRAFT_171461 hypothetical protein
Length=901
Score = 37.7 bits (86), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 22/90 (24%)
Query 434 MCIYHNVPLLD-YVSSAPDP------------------QFFVTQNTDLPIPELDSIGMQS 474
+ I H VPLLD +S+A DP QFF+ Q+ LPI EL +I +
Sbjct 811 LAITH-VPLLDNTLSAACDPFVYADALSTWDVMIAWFFQFFLRQH--LPIAELFAISSDT 867
Query 475 VPVSMYSNSDKELVTGFSSADFTMGYLPRY 504
V++ +++ + +G SA+F +G +P Y
Sbjct 868 KTVNLITSATEWRASGIVSAEFELGRMPAY 897
Lambda K H a alpha
0.318 0.132 0.403 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1375374696596