bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-40_CDS_annotation_glimmer3.pl_2_1
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
alv:Alvin_2866 hypothetical protein 35.4 1.6
dma:DMR_33240 ftsQ; cell division protein FtsQ 37.4 1.7
bfo:BRAFLDRAFT_84492 hypothetical protein 35.8 5.3
pce:PECL_1281 rpoA; DNA-directed RNA polymerase subunit alpha 35.4 6.8
crn:CAR_c07290 polA; DNA polymerase I (EC:2.7.7.7) 35.4 7.6
> alv:Alvin_2866 hypothetical protein
Length=89
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 36/83 (43%), Gaps = 4/83 (5%)
Query 19 EPLGTLAGR-GVATMYKSGRGLKIKCTEPSMIMALGSITPRIDY--SQGNKWWTRLQNMD 75
E L T R V M +GRGL+ E A G I S+G KW +
Sbjct 6 ETLMTFPCRFAVKAMGPAGRGLEAVVVEIVSRHAEGVDETAISVRESRGGKWIAVTLTFE 65
Query 76 DFHKPTLDAIGFQELIAEEAAAW 98
KP LDAI +QEL A E AW
Sbjct 66 AHSKPQLDAI-YQELSAHELVAW 87
> dma:DMR_33240 ftsQ; cell division protein FtsQ
Length=313
Score = 37.4 bits (85), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 7/64 (11%)
Query 36 GRGLKIKCTEPSMIMALGSITPRIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELIAEEA 95
GRGL+I+ EP +++ LGS R + S+ N W MD + LD +G + AE
Sbjct 245 GRGLEIRLMEPGIVLCLGSQNWRRNLSRMNMVW-----MDLRRRGELDKVGL--ITAEGD 297
Query 96 AAWT 99
W
Sbjct 298 KVWV 301
> bfo:BRAFLDRAFT_84492 hypothetical protein
Length=361
Score = 35.8 bits (81), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query 111 QSLGKQPSWIE--YTTDVNETYGEFAAGMPLAFMCLNRVYEENSDHTIGNASTYIDPTIY 168
SL + P+W+E YT V G+F+ FMC+ +E N+ IG Y++P IY
Sbjct 134 HSLPRFPNWLEESYTWPV----GDFSTKYAHIFMCV--TFEHNAFRMIGKLLMYMEPAIY 187
Query 169 NSIFAESRLSSQNFWVQVAFD 189
++ S L N + A D
Sbjct 188 DASLPAS-LQEDNPYFSPAMD 207
> pce:PECL_1281 rpoA; DNA-directed RNA polymerase subunit alpha
Length=314
Score = 35.4 bits (80), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 32/116 (28%), Positives = 51/116 (44%), Gaps = 14/116 (12%)
Query 42 KCTEPSMIMALGSI-TP--RIDYSQGNKWWTRLQNMDDFHKPTLDAIGFQELIAEEAAAW 98
K P ++ + SI TP R++Y N TR+ DD+ K TLD L A EA +
Sbjct 156 KVDMPIGVLPIDSIYTPIERVNYQVEN---TRVGQRDDYDKLTLDVWTDGSLAASEAISL 212
Query 99 TTEATDDHELVYQSLGKQPSWIEYTTDVNETYGEFAAGMPL--------AFMCLNR 146
+ + +H ++ +L Q E + ET+ E M + ++ CL R
Sbjct 213 SAKILTEHLTIFVNLDDQAKDTEIMVEKEETHKEKMLEMTIEELDLSVRSYNCLKR 268
> crn:CAR_c07290 polA; DNA polymerase I (EC:2.7.7.7)
Length=887
Score = 35.4 bits (80), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 41/147 (28%), Positives = 65/147 (44%), Gaps = 26/147 (18%)
Query 70 RLQNMDDFHKPTLDAIGFQELIAEEAAAWTTEATDDHELVYQSLG----KQPSWIEYTTD 125
R++N + H L GF +I + T+ H LV G + + EY
Sbjct 30 RMKNKNGLHTNAL--YGFHNMID----SVLTKEKPTHVLVAFDAGNTTFRHSFFDEYKAG 83
Query 126 VNETYGEFAAGMPLAFMCLN----RVYE-EN--SDHTIGNASTYIDPTIYNSIFAE---- 174
++T EF+ MP L+ R YE EN +D IG +T +DPTIY+ +
Sbjct 84 RSKTPREFSEQMPYLRELLDGFGIRHYELENFEADDIIGTLATKVDPTIYDVVVISGDRD 143
Query 175 -SRLSSQNFWVQVAFDVTARRVMSAKQ 200
++L+ +N V D+T + V K+
Sbjct 144 LTQLAKENVRV----DITVKGVSELKE 166
Lambda K H a alpha
0.316 0.130 0.386 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 229187319678