bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-41_CDS_annotation_glimmer3.pl_2_1

Length=131
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  tde:TDE2221  hypothetical protein                                   34.7    3.5
  npa:UCRNP2_4331  putative selenocysteine lyase protein              33.9    7.4
  sly:544289  PME2.1, PE_2.1; pectin esterase (EC:3.1.1.11)           33.5    9.8


> tde:TDE2221  hypothetical protein
Length=344

 Score = 34.7 bits (78),  Expect = 3.5, Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 31/52 (60%), Gaps = 3/52 (6%)

Query  11  AIGFQELIAEEAAAWSTEATGNHELVYQSLG-KQPSWIEYTTDVNETYGDFA  61
           A GF+ LIAEE +AW    +G++ L+YQ L  K+P+W  +    + T G F 
Sbjct  17  AEGFK-LIAEEKSAWEGTESGDY-LIYQDLSWKEPTWAGFLYYNDNTIGSFV  66


> npa:UCRNP2_4331  putative selenocysteine lyase protein
Length=396

 Score = 33.9 bits (76),  Expect = 7.4, Method: Composition-based stats.
 Identities = 18/49 (37%), Positives = 21/49 (43%), Gaps = 0/49 (0%)

Query  19   AEEAAAWSTEATGNHELVYQSLGKQPSWIEYTTDVNETYGDFAAGMPLA  67
            A     W   A     LV Q +   PS I +T D  E  G FA  +PLA
Sbjct  54   ATPKPGWQARAEEARGLVGQYINASPSSIAFTRDTTEGLGYFAQSLPLA  102


> sly:544289  PME2.1, PE_2.1; pectin esterase (EC:3.1.1.11)
Length=550

 Score = 33.5 bits (75),  Expect = 9.8, Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query  1    MDDFHKPTLDAIGFQELIAEEAAAWSTEA---TGNHELVYQSLGKQPSWI  47
            +D F K  ++     ELI+    A +  A   T N E++   LGK PSW+
Sbjct  170  LDSFTKAMINGTNLDELISRAKVALAMLASVTTPNDEVLRPGLGKMPSWV  219



Lambda      K        H        a         alpha
   0.317    0.130    0.388    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 127182003372