bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: all_orgs
14,240,465 sequences; 5,121,972,263 total letters
Query= Contig-5_CDS_annotation_glimmer3.pl_2_6
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
fve:101314332 capsid protein VP1-like 45.8 0.021
ebf:D782_1397 putative acyltransferase 37.4 3.4
nfi:NFIA_018890 TBP associated factor (Mot1), putative 38.9 3.6
cmo:103487219 floral homeotic protein AGAMOUS-like 37.0 9.3
afm:AFUA_1G05830 TBP associated factor (Mot1) 37.7 9.8
pda:103700107 uncharacterized LOC103700107 37.0 10.0
> fve:101314332 capsid protein VP1-like
Length=421
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 57/228 (25%), Positives = 82/228 (36%), Gaps = 31/228 (14%)
Query 157 SGSANKDKQIKISAYSFRAYEGIYNAYIRDNRNNPYYVNGQVQYNKWIPTYDGGADQNIY 216
+G + SA RAY IYN + RD V + P+ + Y
Sbjct 164 AGQVGVSNTVSHSALPVRAYNLIYNQWFRDENLQNSVVVDKGDGPDTTPSTN-------Y 216
Query 217 ELRYANWEKDFLTTAVQSPQQG----TAPLVGITTYTETVETTSDDGTPVTRELSRIALV 272
L D+ T+A+ PQ+G + PL + + SD G T + + I +
Sbjct 217 TLLRRGKRHDYFTSALPWPQKGGTAVSLPLGTSAPIAFSGASGSDVGVISTTQGNLIKNM 276
Query 273 DEDGKKYQVSFDSDS--EGLKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQ 330
G + S + GL Y +L + +IN LR Q
Sbjct 277 YSTGSGTSLKIGSATVATGL----YADLS--------------AATAATINQLRQSFQIQ 318
Query 331 KFLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFGGFSRDIEMHSI 378
K LE + R G Y +II F V L PE+ GG S I + I
Sbjct 319 KLLERDARGGTRYTEIIRSHFGVASPDARLQRPEYLGGGSTPINIAPI 366
> ebf:D782_1397 putative acyltransferase
Length=153
Score = 37.4 bits (85), Expect = 3.4, Method: Composition-based stats.
Identities = 32/130 (25%), Positives = 53/130 (41%), Gaps = 24/130 (18%)
Query 355 VRYDELLMPEFFGGFSRDIEMHSISQT-VDQDLDGSQTYAKALGSQSGIAGVRGDS---- 409
+ + +L +P+ + E+ + Q V QD+DG +G + G +GD+
Sbjct 7 LHHSDLTVPQLYALLQLRCEVFVVEQACVYQDIDGDDL----VGENRHLLGWQGDTLVAY 62
Query 410 GRALECFCDEESIVMGILIVTP---------------LPVYTQLLPKHFTYRGLLDHYQP 454
R L+ D + +G +IV+P L Q P+H Y G H Q
Sbjct 63 ARLLKSEDDFSPVSIGRVIVSPAVRGEKLGYQLMERALASCAQHWPEHALYLGAQAHLQN 122
Query 455 EFNHIGFQPI 464
+ H GF P+
Sbjct 123 FYRHFGFIPV 132
> nfi:NFIA_018890 TBP associated factor (Mot1), putative
Length=1920
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 42/90 (47%), Gaps = 5/90 (6%)
Query 281 VSFDSDSEG-LKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQKFLELNMRK 339
+ DS SEG L G SYV + Q + ++D+V S + L+ + +FL L+
Sbjct 1683 IGVDSPSEGDLSGASYVSPHRALIFCQMKEMLDIVQSEV----LKKLLPSVQFLRLDGSV 1738
Query 340 GYSYRDIIEGRFNVKVRYDELLMPEFFGGF 369
+ R I RFN YD LL+ GG
Sbjct 1739 EATKRQDIVNRFNTDPSYDVLLLTTSVGGL 1768
> cmo:103487219 floral homeotic protein AGAMOUS-like
Length=265
Score = 37.0 bits (84), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 50/106 (47%), Gaps = 19/106 (18%)
Query 308 RNLIDVVTSGISINDLRNVNAYQKFLELNMRKGYSYRDIIEGRFNVKVRYDELLMPEFFG 367
R+L+ S +S+ DL K LE+ + KG S ++ R +ELL E
Sbjct 142 RHLLGESISSLSVKDL-------KSLEVKLEKGLS---------RIRSRKNELLFSEIEY 185
Query 368 GFSRDIEMHSISQTVDQDL-DGSQTYAKALGSQSGIA--GVRGDSG 410
R+IE+H+ +Q + + + ++ S +GIA G RGD G
Sbjct 186 MQKREIELHTNNQLIRAKIAETERSQQNRNASNNGIAATGGRGDEG 231
> afm:AFUA_1G05830 TBP associated factor (Mot1)
Length=1891
Score = 37.7 bits (86), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (47%), Gaps = 5/90 (6%)
Query 281 VSFDSDSEG-LKGVSYVELDNEVKLRQPRNLIDVVTSGISINDLRNVNAYQKFLELNMRK 339
+ DS SEG L G SYV + Q + ++D+V S + L +V +FL L+
Sbjct 1654 IGVDSPSEGDLSGASYVSPHRALIFCQMKEMLDIVQSEVFNKLLPSV----QFLRLDGSV 1709
Query 340 GYSYRDIIEGRFNVKVRYDELLMPEFFGGF 369
+ R I RFN YD LL+ GG
Sbjct 1710 EATRRQDIVNRFNTDPSYDVLLLTTSVGGL 1739
> pda:103700107 uncharacterized LOC103700107
Length=332
Score = 37.0 bits (84), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (7%)
Query 454 PEFNHIGFQPILYKEVCPLQ-AYSDGPDTLSDVFGYNRPWYEYVQKYDQAHGLFRTNLSN 512
P+F + P + + CPL + S GP S F + + W Y Q +D +RT +
Sbjct 152 PQFTWVSHLPRIASDYCPLLISTSSGPCHHSP-FRFEKVWLSYPQSWDIVRDAWRTPVRG 210
Query 513 FLMHRVFNQKPQLAQSFL-VIDPAQVTDVFAVTKADDGTELA 553
MH++ ++K +LA+ L + V D+F + +G E+A
Sbjct 211 DAMHQI-SRKLELARRHLRRWNREVVGDIF---QRVEGVEIA 248
Lambda K H a alpha
0.319 0.137 0.408 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 1326783499692