bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters



Query= Contig-7_CDS_annotation_glimmer3.pl_2_1

Length=354
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  ccx:COCOR_07912  hypothetical protein                               39.3    1.3
  gbc:GbCGDNIH3_5103  hypothetical protein                            38.1    3.2
  nvn:NVIE_012010  exported protein of unknown function               37.0    4.2


> ccx:COCOR_07912  hypothetical protein
Length=1121

 Score = 39.3 bits (90),  Expect = 1.3, Method: Composition-based stats.
 Identities = 27/79 (34%), Positives = 41/79 (52%), Gaps = 7/79 (9%)

Query  230  IASRLEIEARTQGQHISNKIARSTADAVIDATCTAKENEAAFNRGYSQFSNDVGFRTGKM  289
            +A RL+++ R  G  +  +  R  AD  ++AT  AKE EA+  RGYS  S     +TG  
Sbjct  640  LALRLDLDGRVGGIVVDAE-GRPLADVTVEAT--AKEEEASTGRGYSPLSA----KTGPD  692

Query  290  DRWSQDPVKARWDRGINNA  308
             R+  +P+   WD  +  A
Sbjct  693  GRFVLEPLARDWDYELTAA  711


> gbc:GbCGDNIH3_5103  hypothetical protein
Length=1656

 Score = 38.1 bits (87),  Expect = 3.2, Method: Compositional matrix adjust.
 Identities = 73/264 (28%), Positives = 116/264 (44%), Gaps = 46/264 (17%)

Query  50   KSRDF----AKSMFDATNEWNS--AKNQRARLEEAGLNPYLMMNGGSAGTASSTSANTVS  103
            K+RD+    AKS  D  N+ N+  A  ++ R  +A  +        +A  A   S NTVS
Sbjct  489  KNRDYFTSQAKSYVDQQNKLNADIAAAEKKRASDARASRQSATADRAADRADLRSDNTVS  548

Query  104  GASGSGGSPYQFTPTNMIGDVASYAAAMKSMSDARKTNTESDLLDQYGAATYESRIKKTM  163
               G   S +Q T     GD     AA+  ++  +K NT++    + G A Y +  +K +
Sbjct  549  ALEGQISSLHQLTVAYHEGD-----AAIAGITAQQKANTDALKYGREGTAAYAAEYQKVL  603

Query  164  ADTYFTQRQADVAIAQRANLLLRNDAQEVLNM-YLPEEKRIQLQMNGAQYWNMIREGVIS  222
                + Q    VA A++   L + +A +  ++ Y+  E R  L MN A            
Sbjct  604  --PLYQQ----VAEAEQTLALAKKNAADQSSLDYIEAETRT-LGMNDA------------  644

Query  223  EEQAKNLIASRLEIEARTQGQHISNKIAR---STADAVIDATCTAKENEAAFNR----GY  275
             E++K L   +LE E R QG  + +  A+   +  D +I+A       +AAFN     G 
Sbjct  645  -ERSKMLSHMKLEAEFRAQGIPLLSDEAQKRIALTDRIIEANGVLARQQAAFNELQSFGE  703

Query  276  SQFSNDVG------FRTGKMDRWS  293
            + F N +G      F TGK++  S
Sbjct  704  NTF-NTIGTAITQAFATGKLEAVS  726


> nvn:NVIE_012010  exported protein of unknown function
Length=237

 Score = 37.0 bits (84),  Expect = 4.2, Method: Compositional matrix adjust.
 Identities = 26/75 (35%), Positives = 32/75 (43%), Gaps = 4/75 (5%)

Query  100  NTVSGASGSGGSPYQFTPTNMIGDVASYAAAMKSMSDARKTNTESDLLDQYGAATYESRI  159
            N V G     G P   TPTN I D A   A  +++++   TN E+ LL  Y    Y S  
Sbjct  144  NVVVGVEPGIGKPSGPTPTNEIIDNAKAVAKSRAVAELNNTNVEAKLLAVY----YNSEF  199

Query  160  KKTMADTYFTQRQAD  174
             K  A    T  Q D
Sbjct  200  PKGAAMFVITSEQGD  214



Lambda      K        H        a         alpha
   0.312    0.126    0.352    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 669457732882