bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: all_orgs
           14,240,465 sequences; 5,121,972,263 total letters





Query= Contig-9_CDS_annotation_glimmer3.pl_2_6

Length=384
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  fve:101314332  capsid protein VP1-like                              45.1    0.020
  ana:alr2467  hypothetical protein                                   38.1    2.0
  ava:Ava_0399  hypothetical protein                                  38.1    2.4
  pfj:MYCFIDRAFT_213894  hypothetical protein                         38.1    3.5


> fve:101314332  capsid protein VP1-like
Length=421

 Score = 45.1 bits (105),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 40/76 (53%), Gaps = 1/76 (1%)

Query  105  INSKLRLDLSSLKSQFTVLALRQAEALQRWKEISQSGDSDYREQIRKHFGVKLPQALSNM  164
            + + L  DLS+  +  T+  LRQ+  +Q+  E    G + Y E IR HFGV  P A    
Sbjct  292  VATGLYADLSAATAA-TINQLRQSFQIQKLLERDARGGTRYTEIIRSHFGVASPDARLQR  350

Query  165  CTYIGGVSRNLDISEV  180
              Y+GG S  ++I+ +
Sbjct  351  PEYLGGGSTPINIAPI  366


> ana:alr2467  hypothetical protein
Length=263

 Score = 38.1 bits (87),  Expect = 2.0, Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query  232  GQDGQLLVTDAESLP--IPEFDNIGMEVLP-----------MTQVFNSPKASIVNLFNAG  278
            G D  LLVT A  +P  +  F   GM V+P           + ++ N+PKA+I+NL    
Sbjct  179  GIDQVLLVTSALHMPRSLKIFQRQGMNVIPAPTDFLVSEGELQELGNTPKAAILNLLPDT  238

Query  279  YNPRYFNWKTKLDVINGAFTTTLKSWV  305
            YN   F    K  V  G+F   L+ WV
Sbjct  239  YNLHLFTNALKEYV--GSFVYWLRGWV  263


> ava:Ava_0399  hypothetical protein
Length=263

 Score = 38.1 bits (87),  Expect = 2.4, Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 15/87 (17%)

Query  232  GQDGQLLVTDAESLP--IPEFDNIGMEVLP-----------MTQVFNSPKASIVNLFNAG  278
            G D  LLVT A  +P  +  F   GM V+P           + ++ N+PKA+I+NL    
Sbjct  179  GIDKVLLVTSALHMPRSLKIFQRQGMNVIPAPTDFLVSAGELQELGNTPKAAILNLLPDT  238

Query  279  YNPRYFNWKTKLDVINGAFTTTLKSWV  305
            YN   F    K  V  G+F   L+ WV
Sbjct  239  YNLHLFTNALKEYV--GSFIYWLRGWV  263


> pfj:MYCFIDRAFT_213894  hypothetical protein
Length=1237

 Score = 38.1 bits (87),  Expect = 3.5, Method: Composition-based stats.
 Identities = 21/57 (37%), Positives = 30/57 (53%), Gaps = 4/57 (7%)

Query  189  GDTAVIAG--KGVGAGNGSFEYTTTEHCVVMCIYHAVPLLDYTLTGQDGQLLVTDAE  243
            GDTA IA   +  G G G  E T+T H  + C    +P+++Y L+  D Q+   D E
Sbjct  138  GDTAAIAKATRADGEGEGKLEGTSTLHLAIQCA--EIPVIEYVLSQHDTQVNAKDKE  192



Lambda      K        H        a         alpha
   0.317    0.135    0.407    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 756718207614