bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-12_CDS_annotation_glimmer3.pl_2_1
Length=56
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_feces_E_017_Microviridae_AG0124_putative.VP4 21.9 0.37
Gokush_Human_feces_A_020_Microviridae_AG0262_putative.VP4 21.9 0.37
Gokush_Human_feces_A_019_Microviridae_AG0436_putative.VP4 21.9 0.45
Alpavirinae_Human_feces_C_016_Microviridae_AG0273_putative.VP4 19.2 3.5
Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia... 19.2 3.6
Alpavirinae_CF7ML_001_Microviridae_AG0309_putative.VP1 19.2 3.6
Gokush_Human_feces_B_029_Microviridae_AG0417_putative.VP1 18.9 5.1
Gokush_Human_gut_33_018_Microviridae_AG0171_putative.VP1 18.9 5.9
Alpavirinae_Human_feces_C_043_Microviridae_AG0321_putative.VP4 18.1 9.4
> Gokush_Human_feces_E_017_Microviridae_AG0124_putative.VP4
Length=338
Score = 21.9 bits (45), Expect = 0.37, Method: Composition-based stats.
Identities = 6/14 (43%), Positives = 11/14 (79%), Gaps = 0/14 (0%)
Query 35 HPDISFTDIIYSSD 48
+PD+++ D+IY D
Sbjct 35 NPDLTYEDLIYRKD 48
> Gokush_Human_feces_A_020_Microviridae_AG0262_putative.VP4
Length=338
Score = 21.9 bits (45), Expect = 0.37, Method: Composition-based stats.
Identities = 6/14 (43%), Positives = 11/14 (79%), Gaps = 0/14 (0%)
Query 35 HPDISFTDIIYSSD 48
+PD+++ D+IY D
Sbjct 35 NPDLTYEDLIYRKD 48
> Gokush_Human_feces_A_019_Microviridae_AG0436_putative.VP4
Length=338
Score = 21.9 bits (45), Expect = 0.45, Method: Composition-based stats.
Identities = 6/13 (46%), Positives = 10/13 (77%), Gaps = 0/13 (0%)
Query 36 PDISFTDIIYSSD 48
PD+++ D+IY D
Sbjct 36 PDLTYEDLIYRKD 48
> Alpavirinae_Human_feces_C_016_Microviridae_AG0273_putative.VP4
Length=304
Score = 19.2 bits (38), Expect = 3.5, Method: Composition-based stats.
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 0/18 (0%)
Query 24 DFTQMIKDTFVHPDISFT 41
D M+ D F++P + F+
Sbjct 230 DKQNMVIDRFINPPVEFS 247
> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315
Score = 19.2 bits (38), Expect = 3.6, Method: Composition-based stats.
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 26 TQMIKDTFVHPDISFTDIIYSSDS 49
++ I+D + H +I F + S S
Sbjct 152 SEFIRDLWTHGNIEFGSVTLDSAS 175
> Alpavirinae_CF7ML_001_Microviridae_AG0309_putative.VP1
Length=692
Score = 19.2 bits (38), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/39 (31%), Positives = 17/39 (44%), Gaps = 2/39 (5%)
Query 12 VLHYAVSTDYVEDFTQMIKDTFVHPDISFTDIIYSSDSR 50
+ HY V D +D TQ I + +I +SD R
Sbjct 395 LAHYGV--DVADDLTQSIYVGGFQKALEVNPVIATSDGR 431
> Gokush_Human_feces_B_029_Microviridae_AG0417_putative.VP1
Length=530
Score = 18.9 bits (37), Expect = 5.1, Method: Composition-based stats.
Identities = 11/34 (32%), Positives = 15/34 (44%), Gaps = 0/34 (0%)
Query 11 RVLHYAVSTDYVEDFTQMIKDTFVHPDISFTDII 44
R L + D++ DF M K T P S +I
Sbjct 494 RTLARSDQPDFIADFYFMNKTTRCMPVYSIPGLI 527
> Gokush_Human_gut_33_018_Microviridae_AG0171_putative.VP1
Length=577
Score = 18.9 bits (37), Expect = 5.9, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 13/22 (59%), Gaps = 0/22 (0%)
Query 34 VHPDISFTDIIYSSDSRQFFQL 55
++ D+S I +D RQ FQ+
Sbjct 319 IYADLSGVSAITINDLRQAFQI 340
> Alpavirinae_Human_feces_C_043_Microviridae_AG0321_putative.VP4
Length=546
Score = 18.1 bits (35), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 6/24 (25%), Positives = 14/24 (58%), Gaps = 0/24 (0%)
Query 21 YVEDFTQMIKDTFVHPDISFTDII 44
++E + + D ++HP +F D +
Sbjct 470 FLEQCEEDLLDFYLHPTENFADYL 493
Lambda K H a alpha
0.329 0.140 0.399 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3677548