bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-12_CDS_annotation_glimmer3.pl_2_4
Length=144
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_gut_37_015_Microviridae_AG033_putative.VP1 26.6 0.084
Gokush_Human_gut_36_019_Microviridae_AG0279_putative.VP1 26.6 0.084
Gokush_Human_gut_35_025_Microviridae_AG0361_putative.VP1 26.6 0.084
Gokush_Human_gut_34_012_Microviridae_AG058_putative.VP1 26.6 0.084
Alpavirinae_Human_gut_21_005_Microviridae_AG012_hypothetical.pr... 26.2 0.11
Pichovirinae_Bourget_523_Microviridae_AG0336_hypothetical.protein 25.0 0.14
Gokush_Human_gut_33_018_Microviridae_AG0171_putative.VP1 25.4 0.20
Alpavirinae_Human_feces_A_016_Microviridae_AG006_putative.VP2 23.9 0.61
Alpavirinae_Human_feces_B_039_Microviridae_AG094_putative.VP2 23.1 1.1
Gokush_gi|19424731|ref|NP_598335.1|_hypothetical_protein_Sp-4p1... 23.1 1.2
> Gokush_Human_gut_37_015_Microviridae_AG033_putative.VP1
Length=582
Score = 26.6 bits (57), Expect = 0.084, Method: Composition-based stats.
Identities = 15/46 (33%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 44 ISNNLADAIKSRLQSVSDFMPDDLRQSFDKLDDFQKMEVTDSRYAQ 89
+SN+L + L VS +DLRQ+F ++K SRY +
Sbjct 316 LSNSLGQQPYADLSGVSAITINDLRQAFQIQKFYEKWARGGSRYTE 361
> Gokush_Human_gut_36_019_Microviridae_AG0279_putative.VP1
Length=582
Score = 26.6 bits (57), Expect = 0.084, Method: Composition-based stats.
Identities = 15/46 (33%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 44 ISNNLADAIKSRLQSVSDFMPDDLRQSFDKLDDFQKMEVTDSRYAQ 89
+SN+L + L VS +DLRQ+F ++K SRY +
Sbjct 316 LSNSLGQQPYADLSGVSAITINDLRQAFQIQKFYEKWARGGSRYTE 361
> Gokush_Human_gut_35_025_Microviridae_AG0361_putative.VP1
Length=582
Score = 26.6 bits (57), Expect = 0.084, Method: Composition-based stats.
Identities = 15/46 (33%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 44 ISNNLADAIKSRLQSVSDFMPDDLRQSFDKLDDFQKMEVTDSRYAQ 89
+SN+L + L VS +DLRQ+F ++K SRY +
Sbjct 316 LSNSLGQQPYADLSGVSAITINDLRQAFQIQKFYEKWARGGSRYTE 361
> Gokush_Human_gut_34_012_Microviridae_AG058_putative.VP1
Length=582
Score = 26.6 bits (57), Expect = 0.084, Method: Composition-based stats.
Identities = 15/46 (33%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 44 ISNNLADAIKSRLQSVSDFMPDDLRQSFDKLDDFQKMEVTDSRYAQ 89
+SN+L + L VS +DLRQ+F ++K SRY +
Sbjct 316 LSNSLGQQPYADLSGVSAITINDLRQAFQIQKFYEKWARGGSRYTE 361
> Alpavirinae_Human_gut_21_005_Microviridae_AG012_hypothetical.protein.BACPLE
Length=383
Score = 26.2 bits (56), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/72 (31%), Positives = 37/72 (51%), Gaps = 5/72 (7%)
Query 30 HSDIYLLHHIGDLNISNNLADAIKSRLQSVSDFMPDDLRQSFDKLDDFQKMEVTDSRYAQ 89
+S IY+ H +G LN + AD +LQ + D + R+ + L Q+ E+ D + Q
Sbjct 186 NSTIYVNHELGQLNHAE--ADLAAKKLQEI-DVAMSEARERINTLRA-QQSEI-DEKIVQ 240
Query 90 WVSDKVSRTKQF 101
D+ R+K+F
Sbjct 241 MKFDRYLRSKEF 252
> Pichovirinae_Bourget_523_Microviridae_AG0336_hypothetical.protein
Length=91
Score = 25.0 bits (53), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/60 (23%), Positives = 31/60 (52%), Gaps = 10/60 (17%)
Query 54 SRLQSVSDFMP-----DDLRQSFDKLDDFQKMEVTDSRYAQWVSDKVSRTKQFMKEYDTA 108
+R QSV+ F P ++ ++D +++E YA+++ +K+S T+ + E+
Sbjct 13 TRGQSVATFTPVYYGEEEEFADVSRMDPIERIE-----YARFIREKISDTRHSLAEHQAG 67
> Gokush_Human_gut_33_018_Microviridae_AG0171_putative.VP1
Length=577
Score = 25.4 bits (54), Expect = 0.20, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 0/46 (0%)
Query 44 ISNNLADAIKSRLQSVSDFMPDDLRQSFDKLDDFQKMEVTDSRYAQ 89
+ +N + I + L VS +DLRQ+F ++K SRY +
Sbjct 311 LQSNNSGGIYADLSGVSAITINDLRQAFQIQKFYEKWARGGSRYTE 356
> Alpavirinae_Human_feces_A_016_Microviridae_AG006_putative.VP2
Length=367
Score = 23.9 bits (50), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (64%), Gaps = 3/33 (9%)
Query 103 KEYDTALSKLKDSEETEKLKVA---QKNLRDFI 132
K+ DTA+ K+ E K K++ QKNLR++I
Sbjct 296 KQADTAVDKIAKEYELGKGKLSLEEQKNLREWI 328
> Alpavirinae_Human_feces_B_039_Microviridae_AG094_putative.VP2
Length=380
Score = 23.1 bits (48), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (29%), Positives = 25/52 (48%), Gaps = 5/52 (10%)
Query 90 WVSDKVSRTKQFMKEYDTALSKLKDSEETEKLKVAQKNLRDFILRLGSAEES 141
W + + + + KE + L S ET+ LK AQ F R+ +A+E+
Sbjct 159 WKNLAIGSSGYWNKETGRVSAALDQSTETQNLKNAQ-----FAERISAAQEA 205
> Gokush_gi|19424731|ref|NP_598335.1|_hypothetical_protein_Sp-4p1_[Spiroplasma_phage_4]
Length=320
Score = 23.1 bits (48), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/24 (42%), Positives = 13/24 (54%), Gaps = 0/24 (0%)
Query 74 LDDFQKMEVTDSRYAQWVSDKVSR 97
LDD +K + Y QW S +SR
Sbjct 146 LDDLEKTIDSQKGYQQWTSKTISR 169
Lambda K H a alpha
0.315 0.131 0.365 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 9326378