bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-12_CDS_annotation_glimmer3.pl_2_6
Length=254
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initia... 23.5 1.7
Alpavirinae_Human_feces_D_008_Microviridae_AG0100_putative.VP4 23.1 2.9
Gokush_gi|9629154|ref|NP_044323.1|_nonstructural_protein_[Chlam... 21.2 3.0
Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1 23.1 3.1
Alpavirinae_Human_gut_30_017_Microviridae_AG0203_putative.VP4 22.7 3.4
Gokush_gi|9629153|ref|NP_044322.1|_nonstructural_protein_[Chlam... 21.6 5.2
Microvirus_gi|176120946|ref|NP_040671.2|_shut_off_host_DNA_synt... 21.9 5.3
Microvirus_gi|176120945|ref|NP_040670.2|_RF_replication,_viral_... 22.3 5.6
Gokush_Bourget_309_Microviridae_AG0286_putative.nonstructural.p... 21.2 5.8
Alpavirinae_Human_feces_B_023_Microviridae_AG0141_putative.VP4 21.6 7.4
> Gokush_gi|12085145|ref|NP_073537.1|_putative_replication_initiation_protein_[Bdellovibrio_phage_phiMH2K]
Length=315
Score = 23.5 bits (49), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%), Gaps = 2/23 (9%)
Query 137 HCLHP--EDFSALHDVLYASKRF 157
HC+ P F+A D++Y+SK+
Sbjct 2 HCIRPIKAGFNATGDIVYSSKKI 24
> Alpavirinae_Human_feces_D_008_Microviridae_AG0100_putative.VP4
Length=532
Score = 23.1 bits (48), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (57%), Gaps = 5/30 (17%)
Query 221 ADSDFTNFVENSVSTHDSL---IKHREIGD 247
DSD+ N + + H+ + IKHREI D
Sbjct 489 VDSDYGNLCRDKL--HNEIRKRIKHREIND 516
> Gokush_gi|9629154|ref|NP_044323.1|_nonstructural_protein_[Chlamydia_phage_1]
Length=58
Score = 21.2 bits (43), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 9/21 (43%), Positives = 12/21 (57%), Gaps = 0/21 (0%)
Query 59 SRFFPVFTGLVNMSNEKIFRL 79
RF+PV G+V + N F L
Sbjct 29 GRFYPVDAGIVTIINAGEFFL 49
> Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1
Length=780
Score = 23.1 bits (48), Expect = 3.1, Method: Composition-based stats.
Identities = 15/43 (35%), Positives = 22/43 (51%), Gaps = 2/43 (5%)
Query 46 GYQIPYALWRSYYSRFFPVFTGLVNMSNEKIFRLFEYWEEIGK 88
GYQ P+ + R +F L ++ N +FR FE E+GK
Sbjct 694 GYQRPWYEYVQKVDRAHGLF--LSSLRNFIMFRSFENAPELGK 734
> Alpavirinae_Human_gut_30_017_Microviridae_AG0203_putative.VP4
Length=363
Score = 22.7 bits (47), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 19/28 (68%), Gaps = 1/28 (4%)
Query 181 YINLSLYKEHY-LALENDSKYFRGWFDR 207
++ +++ E+Y AL++ S + R WF+R
Sbjct 77 FVTITIAPEYYDSALQDPSSFIRMWFER 104
> Gokush_gi|9629153|ref|NP_044322.1|_nonstructural_protein_[Chlamydia_phage_1]
Length=96
Score = 21.6 bits (44), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 9/21 (43%), Positives = 12/21 (57%), Gaps = 0/21 (0%)
Query 59 SRFFPVFTGLVNMSNEKIFRL 79
RF+PV G+V + N F L
Sbjct 67 GRFYPVDAGIVTIINAGEFFL 87
> Microvirus_gi|176120946|ref|NP_040671.2|_shut_off_host_DNA_synthesis_protein_[Enterobacteria_phage_G4_sensu_lato]
Length=341
Score = 21.9 bits (45), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (61%), Gaps = 3/28 (11%)
Query 87 GKLSGYYRVSNQVQWLKNWYYYYYSRPL 114
GKL R++ Q+ L+N + Y YS P+
Sbjct 111 GKL---VRINRQINSLQNTWPYGYSMPI 135
> Microvirus_gi|176120945|ref|NP_040670.2|_RF_replication,_viral_strand_synthesis_protein_[Enterobacteria_phage_G4_sensu_lato]
Length=554
Score = 22.3 bits (46), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (61%), Gaps = 3/28 (11%)
Query 87 GKLSGYYRVSNQVQWLKNWYYYYYSRPL 114
GKL R++ Q+ L+N + Y YS P+
Sbjct 324 GKL---VRINRQINSLQNTWPYGYSMPI 348
> Gokush_Bourget_309_Microviridae_AG0286_putative.nonstructural.protein
Length=84
Score = 21.2 bits (43), Expect = 5.8, Method: Composition-based stats.
Identities = 16/45 (36%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query 205 FDRRFITPTAVLEFPLADSDFTNFVENSVSTHDSLIKHREIGDRY 249
++R F P +A DFT+ V N V+T + L KH + D Y
Sbjct 16 YNRPFTVPHK----NVAIRDFTDEV-NRVATDNQLNKHPDDFDLY 55
> Alpavirinae_Human_feces_B_023_Microviridae_AG0141_putative.VP4
Length=316
Score = 21.6 bits (44), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 7/17 (41%), Positives = 12/17 (71%), Gaps = 0/17 (0%)
Query 72 SNEKIFRLFEYWEEIGK 88
+ EK+++L EYW + K
Sbjct 258 NEEKVYKLMEYWRKKAK 274
Lambda K H a alpha
0.325 0.138 0.449 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 20367292