bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-19_CDS_annotation_glimmer3.pl_2_5
Length=147
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4 234 4e-76
Alpavirinae_Human_gut_33_005_Microviridae_AG0180_putative.VP4 142 6e-42
Alpavirinae_Human_feces_D_015_Microviridae_AG020_putative.VP4 37.4 2e-05
Alpavirinae_Human_feces_B_039_Microviridae_AG093_putative.VP4 23.9 0.64
Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4 23.9 0.69
Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4 23.1 1.3
Alpavirinae_Human_gut_33_017_Microviridae_AG0152_putative.VP4 22.3 2.1
Microvirus_gi|9626381|ref|NP_040711.1|_capsid_protein_[Enteroba... 22.3 2.2
Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4 21.9 3.3
Alpavirinae_Human_feces_D_015_Microviridae_AG019_putative.VP1 21.9 3.4
> Alpavirinae_Human_feces_A_034_Microviridae_AG0102_putative.VP4
Length=539
Score = 234 bits (596), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 129/147 (88%), Positives = 136/147 (93%), Gaps = 0/147 (0%)
Query 1 LSLYINFSDESGCSAvyrlllnyrnlvnnWITAPVGSVAFTGQLRYAVRSIHSFYDYCAK 60
LSLYINFSDESGC+A+YRLLL YRNLV NWITAPVGSVAFTGQL AVR+IHSFYDYC++
Sbjct 393 LSLYINFSDESGCAAIYRLLLQYRNLVKNWITAPVGSVAFTGQLHRAVRAIHSFYDYCSR 452
Query 61 RSLRDQLLKVEKWSNDSYVRENLSIYYFYPLTDVDIMKCSYSEIVFYSPVLRASYADYAA 120
RSL DQL+KVEKWSNDSYVR NLSIYYFYPLTDVDIM S+SEIVF S VLRASYADYAA
Sbjct 453 RSLHDQLVKVEKWSNDSYVRANLSIYYFYPLTDVDIMMKSFSEIVFDSQVLRASYADYAA 512
Query 121 DNRERIKHKALNDKNSLLIAAVDKKPV 147
DNRERIKHKALNDKNSLLIA VDKKPV
Sbjct 513 DNRERIKHKALNDKNSLLIAEVDKKPV 539
> Alpavirinae_Human_gut_33_005_Microviridae_AG0180_putative.VP4
Length=536
Score = 142 bits (357), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 80/144 (56%), Positives = 103/144 (72%), Gaps = 0/144 (0%)
Query 1 LSLYINFSDESGCSAvyrlllnyrnlvnnWITAPVGSVAFTGQLRYAVRSIHSFYDYCAK 60
LSLY+NFS+ GCSAVYRL L YRNL ++WIT P +AF GQLR A R+I++FY Y
Sbjct 392 LSLYLNFSELEGCSAVYRLFLAYRNLCDHWITVPSNHIAFYGQLRKAFRTIYAFYSYMDS 451
Query 61 RSLRDQLLKVEKWSNDSYVRENLSIYYFYPLTDVDIMKCSYSEIVFYSPVLRASYADYAA 120
+ L DQL+KV+ WS ++Y+ + YFYPLTD ++M+ SY E++ S RA+YA+ AA
Sbjct 452 KYLHDQLVKVQSWSQNNYLSTQVDFRYFYPLTDGELMRSSYREVLALSSFCRAAYAEVAA 511
Query 121 DNRERIKHKALNDKNSLLIAAVDK 144
DNR+RIKHK LND N LIA DK
Sbjct 512 DNRQRIKHKYLNDLNCALIAECDK 535
> Alpavirinae_Human_feces_D_015_Microviridae_AG020_putative.VP4
Length=563
Score = 37.4 bits (85), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (52%), Gaps = 11/99 (11%)
Query 42 GQLRYAVRSIHSFYDYCAKRSLRDQL-LKVEKWSNDSYVRENLSIYYFYPLTDVDIMKCS 100
G R ++++ FYDY +SL++QL ++ +S Y E L +Y P ++ ++K
Sbjct 475 GSFRSKLKAVELFYDYRDYQSLKNQLYMQQLVFSELGYSDELLDSFYVKP--NLKVLKNI 532
Query 101 YSEIVFYSPVLRASYADYAADNRERIKHKALNDKNSLLI 139
Y+E + +Y + R+KHK LND+N + +
Sbjct 533 YTE--------KWHDTNYHEVHYFRVKHKVLNDQNDVFL 563
> Alpavirinae_Human_feces_B_039_Microviridae_AG093_putative.VP4
Length=559
Score = 23.9 bits (50), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 12/16 (75%), Gaps = 0/16 (0%)
Query 123 RERIKHKALNDKNSLL 138
R+ IKHK LND N++
Sbjct 540 RDMIKHKRLNDANNIF 555
> Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4
Length=547
Score = 23.9 bits (50), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/61 (20%), Positives = 30/61 (49%), Gaps = 3/61 (5%)
Query 30 WITAPVGSVAFTGQLRYAVRSIHSFYDYCAKRSLRDQLLKVEKWSNDSYVR---ENLSIY 86
W + + F ++ A+R+++ +Y R L +Q + ++ + + R ++L +Y
Sbjct 424 WTSCDICGFGFDREIELAIRNVNRYYSETEYRYLVNQYEDILRFIDSEFYRGEVDDLLMY 483
Query 87 Y 87
Y
Sbjct 484 Y 484
> Alpavirinae_Human_gut_22_017_Microviridae_AG0393_putative.VP4
Length=562
Score = 23.1 bits (48), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 109 PVLRASYADYAADNRERIKHKALNDKNSLLI 139
P++R A R+++KHK +ND + + +
Sbjct 532 PLVRRLAAASLMKCRDKVKHKKVNDLSGIFL 562
> Alpavirinae_Human_gut_33_017_Microviridae_AG0152_putative.VP4
Length=565
Score = 22.3 bits (46), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
Query 109 PVLRASYADYAADNRERIKHKALND 133
P++R A R+++KHK +ND
Sbjct 532 PLVRRLAAASLMKCRDKVKHKKIND 556
> Microvirus_gi|9626381|ref|NP_040711.1|_capsid_protein_[Enterobacteria_phage_phiX174_sensu_lato]
Length=427
Score = 22.3 bits (46), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (30%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query 41 TGQLRYAVRSIHSFYDYCAKRSLRDQLLKVEKWSNDSYVRENLSIYYFYPLTDVDIM 97
+G L+ V H YD C Q +++ +W +S V+ N+++Y P T IM
Sbjct 377 SGDLQERVLIRHHDYDQCF------QSVQLLQW--NSQVKFNVTVYRNLPTTRDSIM 425
> Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4
Length=611
Score = 21.9 bits (45), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 6/17 (35%), Positives = 12/17 (71%), Gaps = 0/17 (0%)
Query 123 RERIKHKALNDKNSLLI 139
++++KHK ND +L+
Sbjct 592 KDKVKHKEFNDMQGVLL 608
> Alpavirinae_Human_feces_D_015_Microviridae_AG019_putative.VP1
Length=584
Score = 21.9 bits (45), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 19/34 (56%), Gaps = 0/34 (0%)
Query 84 SIYYFYPLTDVDIMKCSYSEIVFYSPVLRASYAD 117
S+ YF T D+ C++++ +F+ + A Y D
Sbjct 238 SVTYFEHDTFFDLEYCNWNKDMFFGSLPDAQYGD 271
Lambda K H a alpha
0.321 0.134 0.401 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 9663476