bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-19_CDS_annotation_glimmer3.pl_2_6

Length=54
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_A_034_Microviridae_AG0106_hypothetical....  55.5    8e-14
  Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10...  23.1    0.15
  Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09...  23.1    0.17
  Gokush_Bourget_154_Microviridae_AG0428_putative.VP3                 18.5    7.7
  Gokush_68_Microbialite_003_Microviridae_AG0160_putative.VP3         18.1    9.0


> Alpavirinae_Human_feces_A_034_Microviridae_AG0106_hypothetical.protein
Length=54

 Score = 55.5 bits (132),  Expect = 8e-14, Method: Compositional matrix adjust.
 Identities = 30/50 (60%), Positives = 33/50 (66%), Gaps = 2/50 (4%)

Query  2   KEKKYFFAVLHYMGGKRRVAIRLDSAVIDSYLKAGYIIEISDSICVVEEP  51
           K KKY+ A LHY+G KR V I LD  VIDSYL  GYIIEI   + VV  P
Sbjct  4   KNKKYYSAYLHYLGHKREVVISLD--VIDSYLALGYIIEILKPVIVVTAP  51


> Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10_[Chlamydia_phage_1]
Length=206

 Score = 23.1 bits (48),  Expect = 0.15, Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (54%), Gaps = 0/26 (0%)

Query  13  YMGGKRRVAIRLDSAVIDSYLKAGYI  38
           Y+GGK R  +R  S  +    K GY+
Sbjct  21  YLGGKYRTDVRYRSRKLKELWKFGYV  46


> Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09_[Chlamydia_phage_1]
Length=399

 Score = 23.1 bits (48),  Expect = 0.17, Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (54%), Gaps = 0/26 (0%)

Query  13   YMGGKRRVAIRLDSAVIDSYLKAGYI  38
            Y+GGK R  +R  S  +    K GY+
Sbjct  214  YLGGKYRTDVRYRSRKLKELWKFGYV  239


> Gokush_Bourget_154_Microviridae_AG0428_putative.VP3
Length=135

 Score = 18.5 bits (36),  Expect = 7.7, Method: Compositional matrix adjust.
 Identities = 4/13 (31%), Positives = 10/13 (77%), Gaps = 0/13 (0%)

Query  28  VIDSYLKAGYIIE  40
           ++D ++K G++ E
Sbjct  40  IVDRFMKTGHLPE  52


> Gokush_68_Microbialite_003_Microviridae_AG0160_putative.VP3
Length=159

 Score = 18.1 bits (35),  Expect = 9.0, Method: Compositional matrix adjust.
 Identities = 4/17 (24%), Positives = 10/17 (59%), Gaps = 0/17 (0%)

Query  26  SAVIDSYLKAGYIIEIS  42
           + ++D Y K G++  + 
Sbjct  47  NHIMDKYTKTGHLTHMQ  63



Lambda      K        H        a         alpha
   0.324    0.142    0.401    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3709748