bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters



Query= Contig-1_CDS_annotation_glimmer3.pl_2_1

Length=91
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_D_022_Microviridae_AG0391_hypothetical....    177   4e-57
  Alpavirinae_Human_feces_A_033_Microviridae_AG0384_hypothetical....    174   7e-56
  Gokush_gi|17402859|ref|NP_510871.1|_nonstructural_protein_[Guin...  20.4    3.4
  Gokush_68_Microbialite_003_Microviridae_AG0160_putative.VP3         20.4    3.7
  Gokush_gi|9634956|ref|NP_054654.1|_nonstructural_protein_[Chlam...  19.2    7.5
  Gokush_gi|47566148|ref|YP_022486.1|_nonstructural_protein_[Chla...  19.2    7.5
  Gokush_gi|77020122|ref|YP_338245.1|_putative_non-structural_pro...  19.2    7.5


> Alpavirinae_Human_feces_D_022_Microviridae_AG0391_hypothetical.protein.BACEGG.02723
Length=367

 Score =   177 bits (449),  Expect = 4e-57, Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 87/91 (96%), Gaps = 0/91 (0%)

Query  1    MAQEETEQLLRSQKFELTRQQARAAAMSFVQERILTYRQAEELVRYLTNIHDPKNMWDGI  60
            MAQEETEQLLRSQKFELTRQQARAAAMSFVQERILTYRQAEEL RYL NIHDPKNMWDGI
Sbjct  277  MAQEETEQLLRSQKFELTRQQARAAAMSFVQERILTYRQAEELARYLANIHDPKNMWDGI  336

Query  61   WRIVSLPAGVSKSDFAADLYDALCEEIGSVE  91
            WR+VSLPAG+SKSDFAADLY+AL EEI S++
Sbjct  337  WRLVSLPAGISKSDFAADLYNALYEEINSIK  367


> Alpavirinae_Human_feces_A_033_Microviridae_AG0384_hypothetical.protein.BACEGG.02723
Length=367

 Score =   174 bits (441),  Expect = 7e-56, Method: Compositional matrix adjust.
 Identities = 82/91 (90%), Positives = 85/91 (93%), Gaps = 0/91 (0%)

Query  1    MAQEETEQLLRSQKFELTRQQARAAAMSFVQERILTYRQAEELVRYLTNIHDPKNMWDGI  60
            MAQEETEQLLRSQKFELTRQQAR AAMSFVQERILTYRQAEEL RYL NIHDPKNMWDGI
Sbjct  277  MAQEETEQLLRSQKFELTRQQARLAAMSFVQERILTYRQAEELARYLANIHDPKNMWDGI  336

Query  61   WRIVSLPAGVSKSDFAADLYDALCEEIGSVE  91
            WRIVSLPAG+SKSDFAADLY+AL EEI S +
Sbjct  337  WRIVSLPAGISKSDFAADLYNALYEEITSTK  367


> Gokush_gi|17402859|ref|NP_510871.1|_nonstructural_protein_[Guinea_pig_Chlamydia_phage]
Length=84

 Score = 20.4 bits (41),  Expect = 3.4, Method: Compositional matrix adjust.
 Identities = 10/21 (48%), Positives = 13/21 (62%), Gaps = 0/21 (0%)

Query  71  SKSDFAADLYDALCEEIGSVE  91
           SK+ FAA   D +  EIGS +
Sbjct  39  SKNQFAAHPEDYILYEIGSYD  59


> Gokush_68_Microbialite_003_Microviridae_AG0160_putative.VP3
Length=159

 Score = 20.4 bits (41),  Expect = 3.7, Method: Compositional matrix adjust.
 Identities = 7/17 (41%), Positives = 12/17 (71%), Gaps = 0/17 (0%)

Query  44   VRYLTNIHDPKNMWDGI  60
            V+++  + DPKNM + I
Sbjct  108  VKFVEFMQDPKNMDEAI  124


> Gokush_gi|9634956|ref|NP_054654.1|_nonstructural_protein_[Chlamydia_phage_2]
Length=84

 Score = 19.2 bits (38),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 9/21 (43%), Positives = 13/21 (62%), Gaps = 0/21 (0%)

Query  71  SKSDFAADLYDALCEEIGSVE  91
           +K+ FAA   D +  EIGS +
Sbjct  39  TKNQFAAHPEDYILYEIGSYD  59


> Gokush_gi|47566148|ref|YP_022486.1|_nonstructural_protein_[Chlamydia_phage_3]
Length=84

 Score = 19.2 bits (38),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 9/21 (43%), Positives = 13/21 (62%), Gaps = 0/21 (0%)

Query  71  SKSDFAADLYDALCEEIGSVE  91
           +K+ FAA   D +  EIGS +
Sbjct  39  TKNQFAAHPEDYILYEIGSYD  59


> Gokush_gi|77020122|ref|YP_338245.1|_putative_non-structural_protein_[Chlamydia_phage_4]
Length=84

 Score = 19.2 bits (38),  Expect = 7.5, Method: Compositional matrix adjust.
 Identities = 9/21 (43%), Positives = 13/21 (62%), Gaps = 0/21 (0%)

Query  71  SKSDFAADLYDALCEEIGSVE  91
           +K+ FAA   D +  EIGS +
Sbjct  39  TKNQFAAHPEDYILYEIGSYD  59



Lambda      K        H        a         alpha
   0.318    0.130    0.372    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 4169376