bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-20_CDS_annotation_glimmer3.pl_2_3
Length=94
Score E
Sequences producing significant alignments: (Bits) Value
Microvirus_gi|9625360|ref|NP_039594.1|_capsid_morphogenesis_pro... 26.2 0.032
Microvirus_gi|242346747|ref|YP_002985209.1|_gpD_[Enterobacteria... 25.8 0.053
Alpavirinae_Human_gut_24_085_Microviridae_AG0227_putative.VP4 23.5 0.40
Alpavirinae_CF7ML_001_Microviridae_AG0307_putative.VP4 23.1 0.60
Alpavirinae_Human_gut_32_015_Microviridae_AG0214_putative.VP4 21.9 1.5
Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4 20.4 4.8
Alpavirinae_Human_feces_B_021_Microviridae_AG0373_hypothetical.... 19.2 6.5
> Microvirus_gi|9625360|ref|NP_039594.1|_capsid_morphogenesis_protein_[Enterobacteria_phage_alpha3]
Length=150
Score = 26.2 bits (56), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query 38 KPNNVRITCKVENGIKMKEIYIDGFLMQDVVEKVYRTVNIEELFGEPCRI 87
P NV+ C V G + E I+G V R VN ELF RI
Sbjct 85 HPVNVQTACLVMEGAEFSENIING---------VERPVNAAELFAYTLRI 125
> Microvirus_gi|242346747|ref|YP_002985209.1|_gpD_[Enterobacteria_phage_St-1]
Length=150
Score = 25.8 bits (55), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query 38 KPNNVRITCKVENGIKMKEIYIDGFLMQDVVEKVYRTVNIEELFGEPCRI 87
P N++ C V G + E I+G V R VN ELF RI
Sbjct 85 HPVNIQTACLVMEGAEFSENIING---------VERPVNAAELFAYTLRI 125
> Alpavirinae_Human_gut_24_085_Microviridae_AG0227_putative.VP4
Length=489
Score = 23.5 bits (49), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/31 (39%), Positives = 20/31 (65%), Gaps = 0/31 (0%)
Query 47 KVENGIKMKEIYIDGFLMQDVVEKVYRTVNI 77
KV N +K+KEI G L + V+E+ + +N+
Sbjct 409 KVNNIVKLKEIQKKGGLDKKVIERTIKIINV 439
> Alpavirinae_CF7ML_001_Microviridae_AG0307_putative.VP4
Length=593
Score = 23.1 bits (48), Expect = 0.60, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 14/22 (64%), Gaps = 0/22 (0%)
Query 51 GIKMKEIYIDGFLMQDVVEKVY 72
G+ ++ Y DGFL D++ + Y
Sbjct 536 GMSVRSFYKDGFLDFDIINQFY 557
> Alpavirinae_Human_gut_32_015_Microviridae_AG0214_putative.VP4
Length=489
Score = 21.9 bits (45), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 11/30 (37%), Positives = 19/30 (63%), Gaps = 0/30 (0%)
Query 48 VENGIKMKEIYIDGFLMQDVVEKVYRTVNI 77
V N IK+KEI G L + ++E+ + +N+
Sbjct 410 VNNIIKLKEIQKKGGLDKKIIERTIKIINV 439
> Alpavirinae_Human_feces_A_021_Microviridae_AG075_putative.VP4
Length=547
Score = 20.4 bits (41), Expect = 4.8, Method: Composition-based stats.
Identities = 6/12 (50%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
Query 46 CKVENGIKMKEI 57
C+++N IK KE+
Sbjct 526 CRIQNSIKHKEL 537
> Alpavirinae_Human_feces_B_021_Microviridae_AG0373_hypothetical.protein
Length=60
Score = 19.2 bits (38), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/62 (21%), Positives = 28/62 (45%), Gaps = 13/62 (21%)
Query 7 FRNGEDLKKKACELIDKCIDFKVEGDCIIIEKPNNVRITCKVENGIKMKEIYIDGFLMQD 66
F NG+ +K K+E I + N +T EN ++K++ +G+ ++
Sbjct 9 FENGDSIK-------------KIEKSTNAILRNNYESVTWLEENDARVKKLINNGYWIKT 55
Query 67 VV 68
++
Sbjct 56 II 57
Lambda K H a alpha
0.324 0.144 0.425 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4379158