bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-22_CDS_annotation_glimmer3.pl_2_4
Length=45
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_feces_B_029_Microviridae_AG0419_putative.VP5 36.2 1e-06
Gokush_Human_feces_A_019_Microviridae_AG0441_putative.nonstruct... 34.3 4e-06
Gokush_Human_feces_E_017_Microviridae_AG0130_putative.nonstruct... 32.7 1e-05
Gokush_Human_feces_A_020_Microviridae_AG0266_putative.nonstruct... 31.6 4e-05
Gokush_gi|12085143|ref|NP_073545.1|_nonstructural_protein_[Bdel... 29.3 3e-04
Gokush_SectLung2LLL_002_Microviridae_AG0243_putative.nonstructu... 28.5 0.001
Gokush_gi|9634956|ref|NP_054654.1|_nonstructural_protein_[Chlam... 27.3 0.002
Gokush_gi|47566148|ref|YP_022486.1|_nonstructural_protein_[Chla... 27.3 0.002
Gokush_gi|77020122|ref|YP_338245.1|_putative_non-structural_pro... 27.3 0.002
Gokush_Bourget_332_Microviridae_AG0405_putative.nonstructural.p... 26.9 0.002
> Gokush_Human_feces_B_029_Microviridae_AG0419_putative.VP5
Length=80
Score = 36.2 bits (82), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 18/44 (41%), Positives = 25/44 (57%), Gaps = 1/44 (2%)
Query 3 KDEKTFIGQAPEDYVGYKLAKFNDETG-VFTNEKEKAWEGKPNE 45
K++ +FI PED+ + + DETG + N K EGKPNE
Sbjct 37 KNKDSFISVKPEDFQLHYICTMEDETGQIIDNTKMLVCEGKPNE 80
> Gokush_Human_feces_A_019_Microviridae_AG0441_putative.nonstructural.protein
Length=87
Score = 34.3 bits (77), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 25/34 (74%), Gaps = 0/34 (0%)
Query 9 IGQAPEDYVGYKLAKFNDETGVFTNEKEKAWEGK 42
+G+ +DY +K+AKF+DE+G + N+K K +GK
Sbjct 42 LGKNAKDYTLFKVAKFDDESGEYWNDKHKLQDGK 75
> Gokush_Human_feces_E_017_Microviridae_AG0130_putative.nonstructural.protein
Length=87
Score = 32.7 bits (73), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 15/41 (37%), Positives = 28/41 (68%), Gaps = 0/41 (0%)
Query 2 AKDEKTFIGQAPEDYVGYKLAKFNDETGVFTNEKEKAWEGK 42
A +++ +G+ +DY +K+A F+DE+G + N+K K +GK
Sbjct 35 ACNDENQLGKNAKDYTLFKIATFDDESGEYWNDKHKLQDGK 75
> Gokush_Human_feces_A_020_Microviridae_AG0266_putative.nonstructural.protein
Length=71
Score = 31.6 bits (70), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 24/34 (71%), Gaps = 0/34 (0%)
Query 9 IGQAPEDYVGYKLAKFNDETGVFTNEKEKAWEGK 42
+G+ +DY +K+AKF+D +G + N+K K +GK
Sbjct 26 LGKNAKDYTLFKVAKFDDVSGEYWNDKHKLQDGK 59
> Gokush_gi|12085143|ref|NP_073545.1|_nonstructural_protein_[Bdellovibrio_phage_phiMH2K]
Length=84
Score = 29.3 bits (64), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 21/32 (66%), Gaps = 0/32 (0%)
Query 1 MAKDEKTFIGQAPEDYVGYKLAKFNDETGVFT 32
+AKD ++ + PED+ + L +++D+TG T
Sbjct 35 LAKDPQSTVANHPEDFDLFHLGEYDDQTGKLT 66
> Gokush_SectLung2LLL_002_Microviridae_AG0243_putative.nonstructural.protein
Length=104
Score = 28.5 bits (62), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%), Gaps = 0/29 (0%)
Query 1 MAKDEKTFIGQAPEDYVGYKLAKFNDETG 29
M D++T I + PEDY +++ +F+D
Sbjct 35 MVNDQETRISKHPEDYTLFQIGEFDDSNA 63
> Gokush_gi|9634956|ref|NP_054654.1|_nonstructural_protein_[Chlamydia_phage_2]
Length=84
Score = 27.3 bits (59), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (74%), Gaps = 0/19 (0%)
Query 13 PEDYVGYKLAKFNDETGVF 31
PEDY+ Y++ ++D TG F
Sbjct 47 PEDYILYEIGSYDDSTGTF 65
> Gokush_gi|47566148|ref|YP_022486.1|_nonstructural_protein_[Chlamydia_phage_3]
Length=84
Score = 27.3 bits (59), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (74%), Gaps = 0/19 (0%)
Query 13 PEDYVGYKLAKFNDETGVF 31
PEDY+ Y++ ++D TG F
Sbjct 47 PEDYILYEIGSYDDSTGTF 65
> Gokush_gi|77020122|ref|YP_338245.1|_putative_non-structural_protein_[Chlamydia_phage_4]
Length=84
Score = 27.3 bits (59), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 14/19 (74%), Gaps = 0/19 (0%)
Query 13 PEDYVGYKLAKFNDETGVF 31
PEDY+ Y++ ++D TG F
Sbjct 47 PEDYILYEIGSYDDSTGTF 65
> Gokush_Bourget_332_Microviridae_AG0405_putative.nonstructural.protein
Length=85
Score = 26.9 bits (58), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 0/31 (0%)
Query 9 IGQAPEDYVGYKLAKFNDETGVFTNEKEKAW 39
+ + P+D+ Y L +F+D GVF N + +
Sbjct 45 LNKHPDDFDLYLLGEFDDSRGVFLNNEPQVL 75
Lambda K H a alpha
0.307 0.130 0.382 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3701457