bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters



Query= Contig-25_CDS_annotation_glimmer3.pl_2_1

Length=204
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_B_020_Microviridae_AG0349_putative.VP4      22.7    2.9
  Alpavirinae_Human_feces_A_048_Microviridae_AG086_putative.VP4       22.3    3.8
  Pichovirinae_JCVI_003_Microviridae_AG0343_putative.VP4              21.6    5.6
  Gokush_Human_feces_A_029_Microviridae_AG0224_putative.VP3           21.2    6.4


> Alpavirinae_Human_feces_B_020_Microviridae_AG0349_putative.VP4
Length=332

 Score = 22.7 bits (47),  Expect = 2.9, Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (6%)

Query  123  LCVICNLRHGDRNSISTEVFRALQPSIRRTNAKQAK  158
            L  ICN +  D N I+T+  R +   IR+   K  K
Sbjct  81   LANICNSK--DNNEIATKAVRLMLERIRKKTGKSIK  114


> Alpavirinae_Human_feces_A_048_Microviridae_AG086_putative.VP4
Length=332

 Score = 22.3 bits (46),  Expect = 3.8, Method: Compositional matrix adjust.
 Identities = 12/40 (30%), Positives = 21/40 (53%), Gaps = 5/40 (13%)

Query  119  ILRSLCVICNLRHGDRNSISTEVFRALQPSIRRTNAKQAK  158
            IL+++C     +  D N+I+T+  R +   IR+   K  K
Sbjct  80   ILKNIC-----KSEDDNTIATKAIRLMLERIRKKTGKSIK  114


> Pichovirinae_JCVI_003_Microviridae_AG0343_putative.VP4
Length=275

 Score = 21.6 bits (44),  Expect = 5.6, Method: Compositional matrix adjust.
 Identities = 17/59 (29%), Positives = 23/59 (39%), Gaps = 11/59 (19%)

Query  116  TKVILRSLCVICNLRHGDRNSISTEVFRALQPSIRRTNAKQAKQQLSIPRTIASHRLEK  174
            TK +    C +C  RH     +S   FR L+        K A+    +  T A H L K
Sbjct  8    TKTVPCGKCELCRARH-----VSGWTFRILE------EMKDAESAHFVTMTYADHELPK  55


 Score = 21.2 bits (43),  Expect = 6.9, Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (3%)

Query  36   VGHIFRRSHNLSLINASLAKMGKFRIVEVGELLT-SPE  72
            +GH+       + +  +LA M K RI+ V E  T  PE
Sbjct  141  IGHVHFGKVTEASVRYTLAYMNKPRIIPVDEYDTRQPE  178


> Gokush_Human_feces_A_029_Microviridae_AG0224_putative.VP3
Length=162

 Score = 21.2 bits (43),  Expect = 6.4, Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query  82   IIPNDKQAKEVTVFRERFNKIVVDVTS--TGFCAKIT  116
             I + K + ++ V  ERF +  VDV +   GF   IT
Sbjct  49   YIQSHKDSVDIHVLLERFQRGDVDVLNRVQGFYGDIT  85



Lambda      K        H        a         alpha
   0.322    0.132    0.375    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 15489740