bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-27_CDS_annotation_glimmer3.pl_2_5
Length=118
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10... 23.9 0.46
Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09... 23.1 0.74
Gokush_SectLung2LLL_002_Microviridae_AG0240_putative.VP1 21.6 3.2
Gokush_Human_gut_32_030_Microviridae_AG0187_putative.VP3 20.4 5.1
Gokush_Human_gut_31_045_Microviridae_AG0116_putative.VP3 20.4 5.1
Gokush_Human_gut_27_035_Microviridae_AG0165_putative.VP3 20.4 5.1
Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1 20.4 6.2
> Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10_[Chlamydia_phage_1]
Length=206
Score = 23.9 bits (50), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/60 (32%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query 36 LRELIGLERVVRQDFGYEGTYY--------VTEDGETYDEEYVDAHNPRKTGVKFYEVSN 87
LR+ + +R+V F Y Y V+ED E +D EY +A R V Y + N
Sbjct 100 LRQFLKTKRIVLNGFRYGFPRYFKDLLRKLVSEDSE-FDTEYYNALRKRLLSVCSYSMVN 158
> Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09_[Chlamydia_phage_1]
Length=399
Score = 23.1 bits (48), Expect = 0.74, Method: Composition-based stats.
Identities = 19/60 (32%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query 36 LRELIGLERVVRQDFGYEGTYY--------VTEDGETYDEEYVDAHNPRKTGVKFYEVSN 87
LR+ + +R+V F Y Y V+ED E +D EY +A R V Y + N
Sbjct 293 LRQFLKTKRIVLNGFRYGFPRYFKDLLRKLVSEDSE-FDTEYYNALRKRLLSVCSYSMVN 351
> Gokush_SectLung2LLL_002_Microviridae_AG0240_putative.VP1
Length=540
Score = 21.6 bits (44), Expect = 3.2, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 0/31 (0%)
Query 44 RVVRQDFGYEGTYYVTEDGETYDEEYVDAHN 74
R R D+ + ++ E DE Y DA N
Sbjct 413 RQTRYDYYWPALSHIGEQSIQVDEIYADAGN 443
> Gokush_Human_gut_32_030_Microviridae_AG0187_putative.VP3
Length=157
Score = 20.4 bits (41), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 21/44 (48%), Gaps = 2/44 (5%)
Query 37 RELIGLERVVRQDFGYEGTYYVTEDGET--YDEEYVDAHNPRKT 78
R+ + L R+ FG T ++ GE +D+ + A P++
Sbjct 102 RQFMALPVETREKFGNSFTEFLAASGEADFFDKLGIKAEEPKEV 145
> Gokush_Human_gut_31_045_Microviridae_AG0116_putative.VP3
Length=157
Score = 20.4 bits (41), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 21/44 (48%), Gaps = 2/44 (5%)
Query 37 RELIGLERVVRQDFGYEGTYYVTEDGET--YDEEYVDAHNPRKT 78
R+ + L R+ FG T ++ GE +D+ + A P++
Sbjct 102 RQFMALPVETREKFGNSFTEFLAASGEADFFDKLGIKAEEPKEV 145
> Gokush_Human_gut_27_035_Microviridae_AG0165_putative.VP3
Length=157
Score = 20.4 bits (41), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/44 (25%), Positives = 21/44 (48%), Gaps = 2/44 (5%)
Query 37 RELIGLERVVRQDFGYEGTYYVTEDGET--YDEEYVDAHNPRKT 78
R+ + L R+ FG T ++ GE +D+ + A P++
Sbjct 102 RQFMALPVETREKFGNSFTEFLAASGEADFFDKLGIKAEEPKEV 145
> Alpavirinae_Human_gut_30_017_Microviridae_AG0205_putative.VP1
Length=647
Score = 20.4 bits (41), Expect = 6.2, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 21/59 (36%), Gaps = 19/59 (32%)
Query 50 FGYEGTYYVTEDGETYD--------------EEYV-----DAHNPRKTGVKFYEVSNWR 89
G E TYY E G +D +Y+ D NP + + +V WR
Sbjct 471 LGREQTYYFKEPGYIFDMLTIRPVYFWTGIRPDYLEYRGPDYFNPIYNDIGYQDVPLWR 529
Lambda K H a alpha
0.318 0.139 0.406 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6697444