bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-28_CDS_annotation_glimmer3.pl_2_3
Length=235
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_gut_21_019_Microviridae_AG0380_putative.VP1 23.9 1.4
Gokush_Human_gut_31_054_Microviridae_AG0236_putative.VP1 23.9 1.4
Gokush_Human_gut_27_015_Microviridae_AG040_putative.VP1 23.9 1.4
Gokush_Bourget_259_Microviridae_AG073_putative.VP1 22.7 3.3
Gokush_Bourget_248_Microviridae_AG0251_putative.VP1 22.7 3.4
Gokush_Bourget_504_Microviridae_AG0256_putative.VP1 22.3 4.5
Gokush_gi|9634949|ref|NP_054647.1|_structural_protein_[Chlamydi... 21.9 6.2
Gokush_gi|47566141|ref|YP_022479.1|_structural_protein_[Chlamyd... 21.9 6.2
Gokush_gi|17402851|ref|NP_510872.1|_hypothetical_protein_PhiCPG... 21.9 6.4
Gokush_gi|77020115|ref|YP_338238.1|_putative_major_coat_protein... 21.9 6.6
> Gokush_Human_gut_21_019_Microviridae_AG0380_putative.VP1
Length=563
Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 8/11 (73%), Positives = 10/11 (91%), Gaps = 0/11 (0%)
Query 120 PKGKRRDHFTS 130
P+GKR D+FTS
Sbjct 191 PRGKRHDYFTS 201
> Gokush_Human_gut_31_054_Microviridae_AG0236_putative.VP1
Length=563
Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 8/11 (73%), Positives = 10/11 (91%), Gaps = 0/11 (0%)
Query 120 PKGKRRDHFTS 130
P+GKR D+FTS
Sbjct 191 PRGKRHDYFTS 201
> Gokush_Human_gut_27_015_Microviridae_AG040_putative.VP1
Length=563
Score = 23.9 bits (50), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 8/11 (73%), Positives = 10/11 (91%), Gaps = 0/11 (0%)
Query 120 PKGKRRDHFTS 130
P+GKR D+FTS
Sbjct 191 PRGKRHDYFTS 201
> Gokush_Bourget_259_Microviridae_AG073_putative.VP1
Length=540
Score = 22.7 bits (47), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 29/71 (41%), Gaps = 0/71 (0%)
Query 119 LPKGKRRDHFTSLRITITAAGDMIIVIRQGCKPGAIMILQLQKTTVGPFAGILHPAANTL 178
L +GKR D+FTS G+ + + P + + + G AGI PA
Sbjct 190 LRRGKRHDYFTSALPWPQKGGNAVTIPLGTRAPVYGVGVATATSGNGSTAGIKDPAGLNQ 249
Query 179 TTWDLNTFTNY 189
T + T T Y
Sbjct 250 TWTNATTATPY 260
> Gokush_Bourget_248_Microviridae_AG0251_putative.VP1
Length=546
Score = 22.7 bits (47), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 8/12 (67%), Positives = 11/12 (92%), Gaps = 0/12 (0%)
Query 119 LPKGKRRDHFTS 130
L +GKR+D+FTS
Sbjct 188 LRRGKRKDYFTS 199
> Gokush_Bourget_504_Microviridae_AG0256_putative.VP1
Length=536
Score = 22.3 bits (46), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 7/10 (70%), Positives = 10/10 (100%), Gaps = 0/10 (0%)
Query 121 KGKRRDHFTS 130
+GKR+D+FTS
Sbjct 190 RGKRKDYFTS 199
> Gokush_gi|9634949|ref|NP_054647.1|_structural_protein_[Chlamydia_phage_2]
Length=565
Score = 21.9 bits (45), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/12 (67%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
Query 119 LPKGKRRDHFTS 130
L +GKR D+FTS
Sbjct 187 LKRGKRYDYFTS 198
> Gokush_gi|47566141|ref|YP_022479.1|_structural_protein_[Chlamydia_phage_3]
Length=565
Score = 21.9 bits (45), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 8/12 (67%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
Query 119 LPKGKRRDHFTS 130
L +GKR D+FTS
Sbjct 187 LKRGKRYDYFTS 198
> Gokush_gi|17402851|ref|NP_510872.1|_hypothetical_protein_PhiCPG1p2_[Guinea_pig_Chlamydia_phage]
Length=553
Score = 21.9 bits (45), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 8/12 (67%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
Query 119 LPKGKRRDHFTS 130
L +GKR D+FTS
Sbjct 187 LKRGKRYDYFTS 198
> Gokush_gi|77020115|ref|YP_338238.1|_putative_major_coat_protein_[Chlamydia_phage_4]
Length=554
Score = 21.9 bits (45), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 8/12 (67%), Positives = 10/12 (83%), Gaps = 0/12 (0%)
Query 119 LPKGKRRDHFTS 130
L +GKR D+FTS
Sbjct 188 LKRGKRYDYFTS 199
Lambda K H a alpha
0.323 0.138 0.405 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 18503979