bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-30_CDS_annotation_glimmer3.pl_2_4

Length=63
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Gokush_Human_feces_E_009_Microviridae_AG0282_putative.VP4           19.6    3.7
  Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protei...  19.6    4.0
  Alpavirinae_Human_feces_A_021_Microviridae_AG079_hypothetical.p...  19.6    4.3  
  Alpavirinae_Human_feces_C_016_Microviridae_AG0273_putative.VP4      19.2    4.8


> Gokush_Human_feces_E_009_Microviridae_AG0282_putative.VP4
Length=340

 Score = 19.6 bits (39),  Expect = 3.7, Method: Composition-based stats.
 Identities = 10/35 (29%), Positives = 20/35 (57%), Gaps = 0/35 (0%)

Query  28   DIIQAHNAGRKLVALLVCDHTVKEINAYYLESLKI  62
            ++I+A    RK  A+   +  +K+ +  YL+ LK+
Sbjct  290  EMIEALKEKRKAAAIAKNEAIMKKTDLGYLDYLKV  324


> Gokush_gi|77020121|ref|YP_338244.1|_putative_replication_protein_[Chlamydia_phage_4]
Length=315

 Score = 19.6 bits (39),  Expect = 4.0, Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 1/25 (4%)

Query  21   SIQFSARDIIQAHNAGRKLVALLVC  45
            S++  +RDI Q H  G++L   L+C
Sbjct  194  SLKKVSRDISQDH-YGQRLPEFLMC  217


> Alpavirinae_Human_feces_A_021_Microviridae_AG079_hypothetical.protein.BACEGG.02723
Length=397

 Score = 19.6 bits (39),  Expect = 4.3, Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 17/33 (52%), Gaps = 3/33 (9%)

Query  31   QAHNAGRKLVALLVCDHTVKEINAYYLESLKID  63
            Q+H A   L A ++     K    YY ES+K+D
Sbjct  289  QSHGA---LTADVLTADGKKTGKKYYQESMKLD  318


> Alpavirinae_Human_feces_C_016_Microviridae_AG0273_putative.VP4
Length=304

 Score = 19.2 bits (38),  Expect = 4.8, Method: Composition-based stats.
 Identities = 6/14 (43%), Positives = 11/14 (79%), Gaps = 0/14 (0%)

Query  1    MRRFYFHVQFTDVE  14
            M R+Y++  F+DV+
Sbjct  217  MPRYYYNKLFSDVD  230



Lambda      K        H        a         alpha
   0.330    0.141    0.411    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3708839