bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-30_CDS_annotation_glimmer3.pl_2_5
Length=119
Score E
Sequences producing significant alignments: (Bits) Value
Pichovirinae_59_Coral_002_Microviridae_AG0340_hypothetical.protein 33.1 2e-04
Pichovirinae_JCVI_003_Microviridae_AG0345_hypothetical.protein 30.8 0.001
Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10... 24.6 0.25
Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4 23.5 0.68
Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09... 22.7 1.0
Alpavirinae_Human_feces_B_020_Microviridae_AG0353_putative.gpH 20.8 5.1
> Pichovirinae_59_Coral_002_Microviridae_AG0340_hypothetical.protein
Length=119
Score = 33.1 bits (74), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/69 (32%), Positives = 34/69 (49%), Gaps = 11/69 (16%)
Query 22 DEVLVEPSESFTVRELIYRLAMGMPVSSGVRSGDYPDHDQDFDDVLPTEDPDF-DLADYA 80
D V P ++ T+R+L+ R + G+P+ + G+Y FD TE P F DL D
Sbjct 24 DTVHTVPDQNLTIRQLLDRHSRGLPLGASQMQGEY------FD----TEIPRFDDLTDMV 73
Query 81 TLKNDLADR 89
K +L +
Sbjct 74 EYKKNLVKK 82
> Pichovirinae_JCVI_003_Microviridae_AG0345_hypothetical.protein
Length=121
Score = 30.8 bits (68), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (69%), Gaps = 0/29 (0%)
Query 19 KVSDEVLVEPSESFTVRELIYRLAMGMPV 47
KV E L +P ++ +++ELI R A G+P+
Sbjct 12 KVWPESLTQPDQALSIKELIQRYANGLPL 40
> Gokush_gi|9629152|ref|NP_044321.1|_hypothetical_protein_chp1p10_[Chlamydia_phage_1]
Length=206
Score = 24.6 bits (52), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 21/40 (53%), Gaps = 1/40 (3%)
Query 47 VSSGVRSGDYPDHDQDFDDVLPTEDPDFDLADYATLKNDL 86
V +G R G +P + +D L +ED +FD Y L+ L
Sbjct 110 VLNGFRYG-FPRYFKDLLRKLVSEDSEFDTEYYNALRKRL 148
> Alpavirinae_Human_feces_E_011_Microviridae_AG0385_putative.VP4
Length=611
Score = 23.5 bits (49), Expect = 0.68, Method: Composition-based stats.
Identities = 10/28 (36%), Positives = 17/28 (61%), Gaps = 0/28 (0%)
Query 52 RSGDYPDHDQDFDDVLPTEDPDFDLADY 79
RSG+ D++F+ ++ T DP F +Y
Sbjct 85 RSGNRYLFDENFETMVSTSDPRFLTPEY 112
> Gokush_gi|9629151|ref|NP_044320.1|_hypothetical_protein_chp1p09_[Chlamydia_phage_1]
Length=399
Score = 22.7 bits (47), Expect = 1.0, Method: Composition-based stats.
Identities = 14/40 (35%), Positives = 21/40 (53%), Gaps = 1/40 (3%)
Query 47 VSSGVRSGDYPDHDQDFDDVLPTEDPDFDLADYATLKNDL 86
V +G R G +P + +D L +ED +FD Y L+ L
Sbjct 303 VLNGFRYG-FPRYFKDLLRKLVSEDSEFDTEYYNALRKRL 341
> Alpavirinae_Human_feces_B_020_Microviridae_AG0353_putative.gpH
Length=352
Score = 20.8 bits (42), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/35 (29%), Positives = 18/35 (51%), Gaps = 0/35 (0%)
Query 62 DFDDVLPTEDPDFDLADYATLKNDLADRERQRKID 96
D+ L + F+ A L+ND+ + +Q +ID
Sbjct 177 DYFVALQEQSKVFEEARAMALQNDITEATKQTQID 211
Lambda K H a alpha
0.314 0.135 0.387 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 6810960