bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-36_CDS_annotation_glimmer3.pl_2_5
Length=60
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Bourget_259_Microviridae_AG073_putative.VP1 20.8 1.4
Gokush_Human_gut_21_019_Microviridae_AG0378_putative.VP3 19.6 2.8
Gokush_Human_gut_33_003_Microviridae_AG066_putative.VP4 19.6 2.9
Gokush_Bourget_504_Microviridae_AG0257_putative.VP2 19.2 3.9
Gokush_Bourget_154_Microviridae_AG0430_putative.VP1 19.2 4.5
Gokush_Human_feces_E_007_Microviridae_AG0414_putative.VP4 19.2 4.9
Gokush_Human_feces_C_031_Microviridae_AG0432_putative.VP4 18.9 6.6
Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1 18.5 8.8
Gokush_Bourget_164_Microviridae_AG044_putative.VP1 18.5 9.2
Gokush_Bourget_332_Microviridae_AG0407_putative.VP1 18.5 9.2
> Gokush_Bourget_259_Microviridae_AG073_putative.VP1
Length=540
Score = 20.8 bits (42), Expect = 1.4, Method: Composition-based stats.
Identities = 9/27 (33%), Positives = 11/27 (41%), Gaps = 0/27 (0%)
Query 34 TEQATLEKMRRHGMFMEKDDLPQTNGN 60
T L + +RH F PQ GN
Sbjct 185 TNYTLLRRGKRHDYFTSALPWPQKGGN 211
> Gokush_Human_gut_21_019_Microviridae_AG0378_putative.VP3
Length=160
Score = 19.6 bits (39), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 7/20 (35%), Positives = 14/20 (70%), Gaps = 0/20 (0%)
Query 32 ELTEQATLEKMRRHGMFMEK 51
+L + ATLE +++ G++ K
Sbjct 110 QLNDPATLEYLQQQGLYGSK 129
> Gokush_Human_gut_33_003_Microviridae_AG066_putative.VP4
Length=318
Score = 19.6 bits (39), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query 4 QALGEALKER---LAKIQLE-KQKTLEQLWNIELT 34
Q +G +++R +I+LE + EQ+W I LT
Sbjct 33 QCIGCRIRQREDWTTRIELEARDYPREQVWFITLT 67
> Gokush_Bourget_504_Microviridae_AG0257_putative.VP2
Length=248
Score = 19.2 bits (38), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (62%), Gaps = 1/34 (3%)
Query 19 LEKQKTLEQLWNI-ELTEQATLEKMRRHGMFMEK 51
L +Q+T ++ W+I + QA+ E+ +R F E+
Sbjct 15 LGQQQTNQKNWDIAQAANQASAEQAQRQMDFQER 48
> Gokush_Bourget_154_Microviridae_AG0430_putative.VP1
Length=540
Score = 19.2 bits (38), Expect = 4.5, Method: Composition-based stats.
Identities = 9/26 (35%), Positives = 11/26 (42%), Gaps = 0/26 (0%)
Query 34 TEQATLEKMRRHGMFMEKDDLPQTNG 59
T A L + +RH F PQ G
Sbjct 185 TNYAILRRGKRHDYFTGALPWPQKGG 210
> Gokush_Human_feces_E_007_Microviridae_AG0414_putative.VP4
Length=298
Score = 19.2 bits (38), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 4/35 (11%)
Query 4 QALGEALKER---LAKIQLE-KQKTLEQLWNIELT 34
Q +G +++R +I+LE + EQ+W I LT
Sbjct 13 QCIGCRIRQREDWTTRIELEARDYPKEQVWFITLT 47
> Gokush_Human_feces_C_031_Microviridae_AG0432_putative.VP4
Length=305
Score = 18.9 bits (37), Expect = 6.6, Method: Composition-based stats.
Identities = 6/11 (55%), Positives = 9/11 (82%), Gaps = 0/11 (0%)
Query 19 LEKQKTLEQLW 29
L + +TLE+LW
Sbjct 152 LYRSRTLEKLW 162
> Alpavirinae_Human_feces_B_007_Microviridae_AG068_putative.VP1
Length=780
Score = 18.5 bits (36), Expect = 8.8, Method: Composition-based stats.
Identities = 15/42 (36%), Positives = 23/42 (55%), Gaps = 3/42 (7%)
Query 10 LKERLAKIQ-LEKQKTLEQLWNIELTEQATLEKM-RRHGMFM 49
LKE LA IQ E K L ++ + ++K+ R HG+F+
Sbjct 674 LKE-LAAIQAFESGKDLNTVFGYQRPWYEYVQKVDRAHGLFL 714
> Gokush_Bourget_164_Microviridae_AG044_putative.VP1
Length=540
Score = 18.5 bits (36), Expect = 9.2, Method: Composition-based stats.
Identities = 8/26 (31%), Positives = 10/26 (38%), Gaps = 0/26 (0%)
Query 34 TEQATLEKMRRHGMFMEKDDLPQTNG 59
T L + +RH F PQ G
Sbjct 185 TNYTILRRGKRHDYFTSALPWPQKGG 210
> Gokush_Bourget_332_Microviridae_AG0407_putative.VP1
Length=568
Score = 18.5 bits (36), Expect = 9.2, Method: Composition-based stats.
Identities = 8/26 (31%), Positives = 10/26 (38%), Gaps = 0/26 (0%)
Query 34 TEQATLEKMRRHGMFMEKDDLPQTNG 59
T L + +RH F PQ G
Sbjct 204 TNYTILRRGKRHDYFTSALPWPQKGG 229
Lambda K H a alpha
0.312 0.127 0.346 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3613148