bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-37_CDS_annotation_glimmer3.pl_2_3
Length=91
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_feces_D_045_Microviridae_AG0399_putative.VP4 26.6 0.024
Gokush_Human_feces_A_029_Microviridae_AG0222_putative.VP4 25.4 0.080
Gokush_Human_feces_E_009_Microviridae_AG0282_putative.VP4 23.9 0.25
Alpavirinae_Human_feces_D_031_Microviridae_AG0425_putative.VP1 21.9 1.1
Gokush_Human_feces_A_013_Microviridae_AG011_putative.VP4 20.8 3.1
Alpavirinae_Human_feces_C_010_Microviridae_AG0198_putative.VP4 20.4 3.8
Alpavirinae_Human_feces_C_016_Microviridae_AG0273_putative.VP4 20.0 5.2
Gokush_Human_gut_32_030_Microviridae_AG0185_putative.VP4 20.0 5.5
Gokush_Human_gut_31_045_Microviridae_AG0114_putative.VP4 20.0 5.5
Gokush_Human_gut_27_035_Microviridae_AG0163_putative.VP4 20.0 5.5
> Gokush_Human_feces_D_045_Microviridae_AG0399_putative.VP4
Length=329
Score = 26.6 bits (57), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 11/40 (28%), Positives = 23/40 (58%), Gaps = 3/40 (8%)
Query 44 NNVRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYHFH 83
++V+ + LRK++ + ++F+ + TQN P H+H
Sbjct 108 SDVQKFMKRLRKHFTGTRIRFYLAGEYGTQNLRP---HYH 144
> Gokush_Human_feces_A_029_Microviridae_AG0222_putative.VP4
Length=343
Score = 25.4 bits (54), Expect = 0.080, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 6/56 (11%)
Query 35 LLPVYDFSGNNVRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYHFHYPDCILF 90
LLP+ S +++ + +RK + D +++ + + P H+H CILF
Sbjct 113 LLPLMTLSKRDMQLFMKRVRKRFCDDRIRYFLAGEYGSTTFRP---HYH---CILF 162
> Gokush_Human_feces_E_009_Microviridae_AG0282_putative.VP4
Length=340
Score = 23.9 bits (50), Expect = 0.25, Method: Composition-based stats.
Identities = 11/51 (22%), Positives = 22/51 (43%), Gaps = 3/51 (6%)
Query 33 GTLLPVYDFSGNNVRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYHFH 83
G Y + + + LR Y+PD+ ++F + + + P H+H
Sbjct 114 GEAFASYSLRKTDFQLFMKRLRYYFPDNKIRFFAAGEYGSHSHRP---HYH 161
> Alpavirinae_Human_feces_D_031_Microviridae_AG0425_putative.VP1
Length=614
Score = 21.9 bits (45), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 3/22 (14%)
Query 41 FSGNNVRSSLNSL---RKYYPD 59
+SG NV +SL +L +KYY D
Sbjct 230 YSGGNVLASLTTLDLAKKYYSD 251
> Gokush_Human_feces_A_013_Microviridae_AG011_putative.VP4
Length=330
Score = 20.8 bits (42), Expect = 3.1, Method: Composition-based stats.
Identities = 10/51 (20%), Positives = 22/51 (43%), Gaps = 3/51 (6%)
Query 33 GTLLPVYDFSGNNVRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYHFH 83
G +P + + + +R+ +PD ++F + +Q P H+H
Sbjct 94 GEAIPSLTLCKRDFQLLMKRIRRRFPDDHIRFFACGEYGSQTFRP---HYH 141
> Alpavirinae_Human_feces_C_010_Microviridae_AG0198_putative.VP4
Length=451
Score = 20.4 bits (41), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query 55 KYYPDSVVKFHFESSFYTQNTLPCPYHFHYPD 86
KY+ D+V F + Q L P+ F YP+
Sbjct 306 KYFKDTVRWFEIARYLHKQYKL--PFKFTYPE 335
> Alpavirinae_Human_feces_C_016_Microviridae_AG0273_putative.VP4
Length=304
Score = 20.0 bits (40), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 26/62 (42%), Gaps = 5/62 (8%)
Query 23 TCNVFTMLLDGTLLPVYDFSGNN-VRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYH 81
TC T+ D L + N VR L+ LRK Y ++ F F TL C H
Sbjct 57 TCLFVTLTFDDDNLKKFSKDTNKAVRLFLDRLRKDY-GKQIRHWFVCEF---GTLRCRPH 112
Query 82 FH 83
+H
Sbjct 113 YH 114
> Gokush_Human_gut_32_030_Microviridae_AG0185_putative.VP4
Length=310
Score = 20.0 bits (40), Expect = 5.5, Method: Composition-based stats.
Identities = 9/51 (18%), Positives = 21/51 (41%), Gaps = 3/51 (6%)
Query 33 GTLLPVYDFSGNNVRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYHFH 83
G +P + + + +RK + + ++F + +Q P H+H
Sbjct 81 GEAIPALTLQKRDFQLLMKRIRKKFENDKIRFFMSGEYGSQTFRP---HYH 128
> Gokush_Human_gut_31_045_Microviridae_AG0114_putative.VP4
Length=310
Score = 20.0 bits (40), Expect = 5.5, Method: Composition-based stats.
Identities = 9/51 (18%), Positives = 21/51 (41%), Gaps = 3/51 (6%)
Query 33 GTLLPVYDFSGNNVRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYHFH 83
G +P + + + +RK + + ++F + +Q P H+H
Sbjct 81 GEAIPALTLQKRDFQLLMKRIRKKFENDKIRFFMSGEYGSQTFRP---HYH 128
> Gokush_Human_gut_27_035_Microviridae_AG0163_putative.VP4
Length=310
Score = 20.0 bits (40), Expect = 5.5, Method: Composition-based stats.
Identities = 9/51 (18%), Positives = 21/51 (41%), Gaps = 3/51 (6%)
Query 33 GTLLPVYDFSGNNVRSSLNSLRKYYPDSVVKFHFESSFYTQNTLPCPYHFH 83
G +P + + + +RK + + ++F + +Q P H+H
Sbjct 81 GEAIPALTLQKRDFQLLMKRIRKKFENDKIRFFMSGEYGSQTFRP---HYH 128
Lambda K H a alpha
0.327 0.140 0.443 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4169376