bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-38_CDS_annotation_glimmer3.pl_2_4

Length=65
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Alpavirinae_Human_feces_C_029_Microviridae_AG0110_hypothetical....  48.5    5e-11
  Alpavirinae_Human_feces_B_020_Microviridae_AG0354_hypothetical....  41.2    3e-08
  Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.p...  38.5    2e-07
  Gokush_gi|47566141|ref|YP_022479.1|_structural_protein_[Chlamyd...  22.7    0.29
  Alpavirinae_Human_feces_C_010_Microviridae_AG0197_hypothetical....  19.2    5.2  


> Alpavirinae_Human_feces_C_029_Microviridae_AG0110_hypothetical.protein
Length=54

 Score = 48.5 bits (114),  Expect = 5e-11, Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 36/54 (67%), Gaps = 0/54 (0%)

Query  9   MGVGVEEKGYELTNDEILKEYELIKQERRLLCRKIYDKEENDKKESGKRQLKLF  62
           M  G   +G+E+  D ++KEY L ++ER+L+C K YDK+  D K+   +QLKLF
Sbjct  1   MKPGEVTQGFEIFEDTVIKEYNLNRKERKLICEKTYDKDLEDLKKWNHKQLKLF  54


> Alpavirinae_Human_feces_B_020_Microviridae_AG0354_hypothetical.protein
Length=80

 Score = 41.2 bits (95),  Expect = 3e-08, Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (55%), Gaps = 0/64 (0%)

Query  1   MKTYAYFNMGVGVEEKGYELTNDEILKEYELIKQERRLLCRKIYDKEENDKKESGKRQLK  60
            K + + N+  G   +G+++  D I K Y + K ERRLL    YD E++ K+     QL 
Sbjct  13  FKRWLWHNLHTGETLEGFQIWEDTIFKSYNIKKTERRLLVEITYDLEKSQKEYFENLQLN  72

Query  61  LFND  64
           LF++
Sbjct  73  LFDN  76


> Alpavirinae_Human_feces_A_048_Microviridae_AG088_hypothetical.protein
Length=54

 Score = 38.5 bits (88),  Expect = 2e-07, Method: Compositional matrix adjust.
 Identities = 21/54 (39%), Positives = 34/54 (63%), Gaps = 0/54 (0%)

Query  9   MGVGVEEKGYELTNDEILKEYELIKQERRLLCRKIYDKEENDKKESGKRQLKLF  62
           M  G    G+E+  D I+KEY L ++ERRL+  K YD++++  +    +QLKL+
Sbjct  1   MIPGECTNGFEIFEDTIIKEYNLNRKERRLIIEKTYDEQKDLLRHVLNQQLKLW  54


> Gokush_gi|47566141|ref|YP_022479.1|_structural_protein_[Chlamydia_phage_3]
Length=565

 Score = 22.7 bits (47),  Expect = 0.29, Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query  8    NMGVGVEEKGYELTNDEILKEYELIKQERR  37
            N+   VE +  + T DE+ K YEL+K+ +R
Sbjct  164  NIQESVEVQMGDTTTDEV-KNYELLKRGKR  192


> Alpavirinae_Human_feces_C_010_Microviridae_AG0197_hypothetical.protein.BACPLE
Length=382

 Score = 19.2 bits (38),  Expect = 5.2, Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 9/45 (20%)

Query  13   VEEKGYELTNDEILKEYELIKQERRLLCRKIYDKEENDKKESGKR  57
            ++E   +L  D  L+  E       LLC+K Y     D KES  R
Sbjct  233  IDENIVQLKFDRYLRSNEF-----ELLCKKTY----QDMKESNSR  268



Lambda      K        H        a         alpha
   0.313    0.137    0.377    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3675489