bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-39_CDS_annotation_glimmer3.pl_2_2
Length=60
Score E
Sequences producing significant alignments: (Bits) Value
Gokush_Human_gut_31_054_Microviridae_AG0235_putative.VP3 20.8 1.3
Gokush_Human_gut_27_015_Microviridae_AG041_putative.VP3 20.8 1.3
Gokush_Human_gut_21_019_Microviridae_AG0378_putative.VP3 18.9 6.0
Alpavirinae_Human_gut_24_085_Microviridae_AG0230_putative.VP1 18.9 6.9
Microvirus_gi|9626383|ref|NP_040713.1|_minor_spike_protein_[Ent... 18.9 7.0
Microvirus_gi|89888105|ref|YP_512798.1|_gpH_[Enterobacteria_pha... 18.9 7.3
Microvirus_gi|89888618|ref|YP_512378.1|_gpH_[Enterobacteria_pha... 18.5 7.9
Alpavirinae_Human_feces_E_011_Microviridae_AG0388_putative.VP1 18.5 9.1
> Gokush_Human_gut_31_054_Microviridae_AG0235_putative.VP3
Length=160
Score = 20.8 bits (42), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 10/18 (56%), Gaps = 0/18 (0%)
Query 39 VIFQKVEECDKTGIEFNL 56
+ VEE D GIEF +
Sbjct 5 TAYDPVEEHDHCGIEFTM 22
> Gokush_Human_gut_27_015_Microviridae_AG041_putative.VP3
Length=160
Score = 20.8 bits (42), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 8/18 (44%), Positives = 10/18 (56%), Gaps = 0/18 (0%)
Query 39 VIFQKVEECDKTGIEFNL 56
+ VEE D GIEF +
Sbjct 5 TAYDPVEEHDHCGIEFTM 22
> Gokush_Human_gut_21_019_Microviridae_AG0378_putative.VP3
Length=160
Score = 18.9 bits (37), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 7/16 (44%), Positives = 10/16 (63%), Gaps = 0/16 (0%)
Query 41 FQKVEECDKTGIEFNL 56
+ VEE D GI+F +
Sbjct 7 YDPVEEHDHCGIDFTM 22
> Alpavirinae_Human_gut_24_085_Microviridae_AG0230_putative.VP1
Length=653
Score = 18.9 bits (37), Expect = 6.9, Method: Composition-based stats.
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 0/18 (0%)
Query 40 IFQKVEECDKTGIEFNLF 57
+ + +E D TG+ +LF
Sbjct 328 VLEITDESDTTGVGMSLF 345
> Microvirus_gi|9626383|ref|NP_040713.1|_minor_spike_protein_[Enterobacteria_phage_phiX174_sensu_lato]
Length=328
Score = 18.9 bits (37), Expect = 7.0, Method: Composition-based stats.
Identities = 13/53 (25%), Positives = 23/53 (43%), Gaps = 0/53 (0%)
Query 1 MNVQSKDGAKASVPQLVDTDKVVVCDLVERELTRQDCVVIFQKVEECDKTGIE 53
+N + GA AS +VD +L + +L Q + Q + + GI+
Sbjct 128 LNAWERAGADASSAGMVDAGFENQKELTKMQLDNQKEIAEMQNETQKEIAGIQ 180
> Microvirus_gi|89888105|ref|YP_512798.1|_gpH_[Enterobacteria_phage_ID18_sensu_lato]
Length=337
Score = 18.9 bits (37), Expect = 7.3, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (42%), Gaps = 0/53 (0%)
Query 1 MNVQSKDGAKASVPQLVDTDKVVVCDLVERELTRQDCVVIFQKVEECDKTGIE 53
+N + GA AS +VD +L +L Q + Q + D GI+
Sbjct 123 LNPWERAGAGASSAGMVDAGFQNQKELTRMQLDNQKEIAKMQNDTQKDIAGIQ 175
> Microvirus_gi|89888618|ref|YP_512378.1|_gpH_[Enterobacteria_phage_ID2_Moscow/ID/2001]
Length=335
Score = 18.5 bits (36), Expect = 7.9, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 22/53 (42%), Gaps = 0/53 (0%)
Query 1 MNVQSKDGAKASVPQLVDTDKVVVCDLVERELTRQDCVVIFQKVEECDKTGIE 53
+N + GA AS +VD +L +L Q + Q + D GI+
Sbjct 123 LNPWERAGAGASSAGMVDAGFQNQKELTRMQLDNQKEIAKMQNDTQKDIAGIQ 175
> Alpavirinae_Human_feces_E_011_Microviridae_AG0388_putative.VP1
Length=622
Score = 18.5 bits (36), Expect = 9.1, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 9/59 (15%)
Query 5 SKDGAKASV--------PQLVDTDKVVVCDLV-ERELTRQDCVVIFQKVEECDKTGIEF 54
SKDG AS+ P +D+ VV D + E + +C V + V + G+ +
Sbjct 564 SKDGKSASISWPFFKVNPNTLDSIFAVVADSIWETDQLLINCDVSCKVVRPLSQDGMPY 622
Lambda K H a alpha
0.320 0.135 0.384 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 3613148