bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: Microviridae_proteins.fasta
575 sequences; 147,441 total letters
Query= Contig-39_CDS_annotation_glimmer3.pl_2_3
Length=101
Score E
Sequences producing significant alignments: (Bits) Value
Alpavirinae_Human_feces_D_015_Microviridae_AG018_hypothetical.p... 159 2e-49
Alpavirinae_Human_feces_D_031_Microviridae_AG0422_hypothetical.... 21.9 1.4
Gokush_Human_feces_C_014_Microviridae_AG0151_putative.VP4 21.9 1.4
Alpavirinae_Human_feces_A_034_Microviridae_AG0103_hypothetical.... 20.0 3.3
Gokush_gi|17402851|ref|NP_510872.1|_hypothetical_protein_PhiCPG... 20.8 3.9
Alpavirinae_Human_gut_33_017_Microviridae_AG0156_putative.VP2 19.6 8.5
> Alpavirinae_Human_feces_D_015_Microviridae_AG018_hypothetical.protein.BACEGG.02723
Length=427
Score = 159 bits (401), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 75/86 (87%), Positives = 80/86 (93%), Gaps = 0/86 (0%)
Query 2 YRGKNVKQDAASDFMGNQWQNQLTGELLNSKRWDNEMQAWREAINSANALLRGSSDAMNT 61
YR + VK DAASDFMGNQWQNQLTGELLNSKRWDNEMQAWREAINSANALLRGSSD M+
Sbjct 328 YRRQYVKLDAASDFMGNQWQNQLTGELLNSKRWDNEMQAWREAINSANALLRGSSDVMDA 387
Query 62 FNTYENGRYERNRPYTSDYEEYEQFD 87
+NTYENGRYER RPY+SDYEEYE+FD
Sbjct 388 YNTYENGRYERGRPYSSDYEEYEEFD 413
> Alpavirinae_Human_feces_D_031_Microviridae_AG0422_hypothetical.protein
Length=150
Score = 21.9 bits (45), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 0/25 (0%)
Query 36 NEMQAWREAINSANALLRGSSDAMN 60
+E+ AW E++ SA +R DA+
Sbjct 106 SEVLAWIESLGSAGDSIRSELDALT 130
> Gokush_Human_feces_C_014_Microviridae_AG0151_putative.VP4
Length=331
Score = 21.9 bits (45), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 14/23 (61%), Gaps = 3/23 (13%)
Query 16 MGNQWQNQLTGELLNSKRWDNEM 38
M +QW ++ L +KRWDN +
Sbjct 58 MADQWATRIE---LEAKRWDNVI 77
> Alpavirinae_Human_feces_A_034_Microviridae_AG0103_hypothetical.protein
Length=62
Score = 20.0 bits (40), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 11/23 (48%), Gaps = 0/23 (0%)
Query 36 NEMQAWREAINSANALLRGSSDA 58
EMQAW E + S L G A
Sbjct 13 TEMQAWLEHLISEGQSLEGDVAA 35
> Gokush_gi|17402851|ref|NP_510872.1|_hypothetical_protein_PhiCPG1p2_[Guinea_pig_Chlamydia_phage]
Length=553
Score = 20.8 bits (42), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query 16 MGNQWQNQLTGELLNSKRWDNEMQAWREAINSANALLRGSSDAMN 60
+G QW N + + W N + INS G++ +N
Sbjct 222 LGIQWGNSSAPNPITASSWINSVNP--TFINSTTPTPTGTNKILN 264
> Alpavirinae_Human_gut_33_017_Microviridae_AG0156_putative.VP2
Length=353
Score = 19.6 bits (39), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 33/68 (49%), Gaps = 4/68 (6%)
Query 18 NQWQNQLTGELLNSKRWDNEMQAWREAINSANALLRGSSDAMNTFNT---YENGRYERNR 74
NQ + + E+L R + + + A +A++L+R +++A N N E +Y R R
Sbjct 251 NQAKKVIADEILTYARIKGQKLSNKVAEATADSLIR-ATNAANRSNAEFDLEAAKYNRER 309
Query 75 PYTSDYEE 82
+ E+
Sbjct 310 ARSRSIED 317
Lambda K H a alpha
0.311 0.126 0.378 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 5045304