bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: Microviridae_proteins.fasta
           575 sequences; 147,441 total letters





Query= Contig-3_CDS_annotation_glimmer3.pl_2_5

Length=67
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Gokush_gi|12085136|ref|NP_073538.1|_major_capsid_protein_[Bdell...  21.2    1.3
  Gokush_Human_feces_A_013_Microviridae_AG011_putative.VP4            18.9    8.9
  Gokush_SectLung2LLL_002_Microviridae_AG0242_putative.VP3            18.5    9.2


> Gokush_gi|12085136|ref|NP_073538.1|_major_capsid_protein_[Bdellovibrio_phage_phiMH2K]
Length=533

 Score = 21.2 bits (43),  Expect = 1.3, Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 4/25 (16%)

Query  35   LFHAVEYVSKHPLVKPCLNKYVIAS  59
            ++H  EY +    VKP LNK  I S
Sbjct  469  VWHLAEYFT----VKPSLNKTFIES  489


> Gokush_Human_feces_A_013_Microviridae_AG011_putative.VP4
Length=330

 Score = 18.9 bits (37),  Expect = 8.9, Method: Composition-based stats.
 Identities = 6/38 (16%), Positives = 20/38 (53%), Gaps = 0/38 (0%)

Query  7   VVVFAPKSPGLEHLSAVSLALDYRVGCTLFHAVEYVSK  44
           V+ F P+   ++    ++L     +GC + ++ ++ ++
Sbjct  23  VIKFHPRPDQMDKFEPIALPCGQCLGCRIEYSRQWANR  60


> Gokush_SectLung2LLL_002_Microviridae_AG0242_putative.VP3
Length=165

 Score = 18.5 bits (36),  Expect = 9.2, Method: Compositional matrix adjust.
 Identities = 6/15 (40%), Positives = 11/15 (73%), Gaps = 0/15 (0%)

Query  49  KPCLNKYVIASLSFQ  63
           K  +NK ++A+ SF+
Sbjct  4   KDTINKPIVATRSFR  18



Lambda      K        H        a         alpha
   0.324    0.137    0.404    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 3642139