bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters



Query= Contig-10_CDS_annotation_glimmer3.pl_2_1

Length=224
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|548246698|ref|WP_022464569.1|  ribonuclease R                      38.5    3.2
gi|488782436|ref|WP_002694843.1|  regulator                           37.7    7.5
gi|495739192|ref|WP_008463771.1|  MULTISPECIES: ATPase                37.0    9.1


>gi|548246698|ref|WP_022464569.1| ribonuclease R [Clostridium sp. CAG:277]
 gi|524770020|emb|CDE69851.1| ribonuclease R [Clostridium sp. CAG:277]
Length=785

 Score = 38.5 bits (88),  Expect = 3.2, Method: Composition-based stats.
 Identities = 22/65 (34%), Positives = 32/65 (49%), Gaps = 9/65 (14%)

Query  153  PRSLHSLMESLASLMENFSQSALPGRLSIPAFSDMRAMVDC-----LAMNYIGLYEAYLR  207
            P+ +  LM ++A   E      L GRL++ +    R   DC     LAM Y   + + +R
Sbjct  507  PKEIQKLMRAIAGKPE----EGLIGRLALRSMKQARYTTDCEGHFGLAMKYYCHFTSPIR  562

Query  208  RYPDL  212
            RYPDL
Sbjct  563  RYPDL  567


>gi|488782436|ref|WP_002694843.1| regulator [Microscilla marina]
 gi|123991121|gb|EAY30573.1| Two component regulator three Y motif family [Microscilla marina 
ATCC 23134]
Length=1336

 Score = 37.7 bits (86),  Expect = 7.5, Method: Composition-based stats.
 Identities = 19/45 (42%), Positives = 26/45 (58%), Gaps = 0/45 (0%)

Query  14    VIFLVRTANYLLNVCVSIYLNLLENMKKYISTLYQNTDPYTSVRI  58
             VI LV   +   NV  + +LNLL N+  YI+   QNTD YT + +
Sbjct  1017  VIGLVSVQSLQSNVYTNYHLNLLRNLAVYITIALQNTDSYTKIEL  1061


>gi|495739192|ref|WP_008463771.1| MULTISPECIES: ATPase [Flavobacterium]
 gi|146300805|ref|YP_001195396.1| ATPase central domain-containing protein [Flavobacterium johnsoniae 
UW101]
 gi|146155223|gb|ABQ06077.1| AAA ATPase, central domain protein [Flavobacterium johnsoniae 
UW101]
 gi|395436248|gb|EJG02183.1| ATPase central domain-containing protein [Flavobacterium sp. 
F52]
Length=363

 Score = 37.0 bits (84),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 20/69 (29%), Positives = 38/69 (55%), Gaps = 5/69 (7%)

Query  36   LENMKKYISTLYQNTDPYTSVRISISYYSRTRTGSPRILAELLIRAGNLVVVIGLPREAT  95
            L  +K+ I++L QN D ++S  I I+      T  P +L + + R  N V+ +G+P+E  
Sbjct  198  LGELKRVINSLLQNIDSFSSSNILIA-----ATNHPELLDKAIWRRFNHVIEVGMPKENE  252

Query  96   LNRTLRAML  104
            ++  L+  +
Sbjct  253  ISELLKEFV  261



Lambda      K        H        a         alpha
   0.326    0.139    0.392    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 869504134146