bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters



Query= Contig-12_CDS_annotation_glimmer3.pl_2_1

Length=56
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|575094318|emb|CDL65705.1|  unnamed protein product                 85.9    2e-20
gi|15239862|ref|NP_199153.1|  uncharacterized protein                 33.1    9.6


>gi|575094318|emb|CDL65705.1| unnamed protein product [uncultured bacterium]
Length=69

 Score = 85.9 bits (211),  Expect = 2e-20, Method: Compositional matrix adjust.
 Identities = 44/56 (79%), Positives = 49/56 (88%), Gaps = 0/56 (0%)

Query  1   VIVYTDIQSVRVLHYAVSTDYVEDFTQMIKDTFVHPDISFTDIIYSSDSRQFFQLI  56
           VI YTDI SVR LHYAVSTD V++F Q+IKDTFVHP+ISFTDIIYS D+R FFQLI
Sbjct  14  VISYTDILSVRSLHYAVSTDSVDNFVQIIKDTFVHPNISFTDIIYSYDNRDFFQLI  69


>gi|15239862|ref|NP_199153.1| uncharacterized protein [Arabidopsis thaliana]
 gi|8843893|dbj|BAA97419.1| unnamed protein product [Arabidopsis thaliana]
 gi|18450363|gb|AAK82505.2| AT5g43400/MWF20_9 [Arabidopsis thaliana]
 gi|25090369|gb|AAN72286.1| At5g43400/MWF20_9 [Arabidopsis thaliana]
 gi|332007573|gb|AED94956.1| uncharacterized protein AT5G43400 [Arabidopsis thaliana]
Length=655

 Score = 33.1 bits (74),  Expect = 9.6, Method: Composition-based stats.
 Identities = 21/53 (40%), Positives = 28/53 (53%), Gaps = 4/53 (8%)

Query  5    TDIQSV--RVLHYAVSTDYVEDFTQMIKDTFVHPDISFTDIIYSSDSRQFFQL  55
            TD Q V  R+L  AV  +  +D  QMIK  FV  D+ F D + +S S   + L
Sbjct  503  TDFQIVFDRILEVAVENNLTDD--QMIKRLFVFSDMEFDDAMANSHSEVSYHL  553



Lambda      K        H        a         alpha
   0.329    0.140    0.399    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 435833352594