bitscore colors: <40, 40-50 , 50-80, 80-200, >200

           BLASTP 2.2.30+


Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.



Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
           49,011,213 sequences; 17,563,301,199 total letters





Query= Contig-1_CDS_annotation_glimmer3.pl_2_3

Length=307
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

gi|547312922|ref|WP_022044634.1|  putative replication initiation...  45.8    0.020
gi|575094374|emb|CDL65755.1|  unnamed protein product                 40.8    0.92
gi|575094560|emb|CDL65924.1|  unnamed protein product                 37.7    8.7
gi|544843469|ref|WP_021258764.1|  alcohol dehydrogenase GroES dom...  37.7    9.1


>gi|547312922|ref|WP_022044634.1| putative replication initiation protein [Alistipes finegoldii 
CAG:68]
 gi|524208442|emb|CCZ76638.1| putative replication initiation protein [Alistipes finegoldii 
CAG:68]
Length=320

 Score = 45.8 bits (107),  Expect = 0.020, Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query  2    CNKPLRITNPHYIKLADQLGVEVPQFSN-------QSDYKLQVPCGKCVQCIRKRQQHWF  54
            C +P  I N  Y   A+    E+  ++          DY L+VPCG C  C +     + 
Sbjct  3    CEQPKVIVNRRY---ANMTNTEIVNYAKVYYGCFWPPDYILEVPCGYCHSCQKSYNNQYR  59

Query  55   VRAHNIYKRLGYNLSNSYFCTFTLKPEFYEAFCKEPYAFIRRFIDRMRK  103
            +R   +Y+   Y      F T T   +  E F K+    +R F+DR RK
Sbjct  60   IRL--LYELRKYPPGTCLFVTLTFNDDSLEKFSKDTNKAVRLFLDRFRK  106


>gi|575094374|emb|CDL65755.1| unnamed protein product [uncultured bacterium]
Length=487

 Score = 40.8 bits (94),  Expect = 0.92, Method: Compositional matrix adjust.
 Identities = 28/76 (37%), Positives = 35/76 (46%), Gaps = 13/76 (17%)

Query  37   VPCGKCVQCIRKRQQHWFVRAHNIYKRLGYNLSNSYFCTFTLKPEFYEAFCKEP-----Y  91
            VPCG C  C   +   W VR     + L  N S SYF T TL P F + +   P     Y
Sbjct  26   VPCGHCYDCKSAKTTDWQVRCS---EELNNN-SQSYFYTLTLDPRFIDTYGTLPDGSPRY  81

Query  92   AFIRR----FIDRMRK  103
             F +R    F+ R+RK
Sbjct  82   VFNKRHIQLFLKRLRK  97


>gi|575094560|emb|CDL65924.1| unnamed protein product [uncultured bacterium]
Length=320

 Score = 37.7 bits (86),  Expect = 8.7, Method: Compositional matrix adjust.
 Identities = 61/236 (26%), Positives = 91/236 (39%), Gaps = 33/236 (14%)

Query  34   KLQVPCGKCVQCIRKRQQHWFVRAHNIYKRLGYNLSNSYFCTFTLKPEFYEAFCKEPYAF  93
            + Q+PCG+C+ C   R     VRAH  ++ L Y+   +YF T T  PE    F       
Sbjct  42   EFQIPCGQCIGCRLDRSLDSAVRAH--HESLLYD--RNYFLTLTYSPEHLPPFGSLIPRD  97

Query  94   IRRFIDRMRKDQF-LRYR-----NPDTGRFCYRKISFPYLFVLEVADGKRAAQrrlhseh  147
            +  F  R+RK    LRY          GR  Y  I    +F L   + K+          
Sbjct  98   LTLFWKRLRKRGVSLRYMACGEYGSTYGRPHYHAI----IFNLPPLELKQIGTTST----  149

Query  148  rlhlhAIMFGCPLPWWRVRHYWMSFGLAWVSPLRHFGGVRYAMKYITKKSAVHWNDVPKE  207
                     G P     V     S G   ++P+  F    Y  +Y+TKK       V ++
Sbjct  150  ---------GFPTFISDVISECWSLGFHTLNPV-SFQTCAYVARYVTKKILGDGKQVYEK  199

Query  208  ILDLHGRLYVS-HGFGRLSESEKDALRAYMMTGCKQWFSV---LIDNHPYSIPRYY  259
               + G +      F R S ++      Y M   + ++ +   LI+N  + IPRYY
Sbjct  200  FDPVTGEVDCRVKEFSRWS-TKPGIGHDYFMKYWRDFYKIDCCLINNKKFKIPRYY  254


>gi|544843469|ref|WP_021258764.1| alcohol dehydrogenase GroES domain protein [Paenibacillus alvei]
 gi|528197949|gb|EPY08140.1| alcohol dehydrogenase GroES domain protein [Paenibacillus alvei 
TS-15]
Length=370

 Score = 37.7 bits (86),  Expect = 9.1, Method: Compositional matrix adjust.
 Identities = 31/112 (28%), Positives = 45/112 (40%), Gaps = 24/112 (21%)

Query  11   PHYIKLADQLGVEVPQFSNQSDYKLQ--------VPCGKCVQCIRKRQQHWFVRAHNIYK  62
            P +I   + LG  V    N +D+K+         VPC +C  C  KR ++W  + HNI+ 
Sbjct  82   PPFIPGHEFLGTIVEIGGNVTDFKIGDRVTADQIVPCQECRFC--KRGEYWMCQPHNIFG  139

Query  63   RLGYNLSNSYFCTFTLKP------------EFYEAFCKEPYAFIRRFIDRMR  102
              G N  N     +   P            E   A   EPYA  +  +DR +
Sbjct  140  FQGSN--NGGMAEYVRYPKTAVVHKVPGQMELESALLIEPYACSKHAVDRAQ  189



Lambda      K        H        a         alpha
   0.328    0.141    0.480    0.792     4.96 

Gapped
Lambda      K        H        a         alpha    sigma
   0.267   0.0410    0.140     1.90     42.6     43.6 

Effective search space used: 1657384462080