bitscore colors: <40, 40-50 , 50-80, 80-200, >200
BLASTP 2.2.30+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics: Alejandro A. Schaffer,
L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri
I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids
Res. 29:2994-3005.
Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF
excluding environmental samples from WGS projects
49,011,213 sequences; 17,563,301,199 total letters
Query= Contig-1_CDS_annotation_glimmer3.pl_2_4
Length=591
Score E
Sequences producing significant alignments: (Bits) Value
gi|648626869|ref|WP_026318620.1| hypothetical protein 233 9e-69
gi|547312923|ref|WP_022044635.1| putative uncharacterized protein 63.5 1e-07
gi|517172762|ref|WP_018361580.1| hypothetical protein 62.0 8e-07
gi|547920049|ref|WP_022322420.1| capsid protein VP1 57.0 3e-05
gi|492501782|ref|WP_005867318.1| hypothetical protein 57.0 3e-05
gi|649555287|gb|KDS61824.1| capsid family protein 52.8 5e-04
gi|649569140|gb|KDS75238.1| capsid family protein 51.6 0.001
gi|649557305|gb|KDS63784.1| capsid family protein 50.8 0.001
gi|494308783|ref|WP_007173938.1| hypothetical protein 50.1 0.004
gi|494306153|ref|WP_007173049.1| hypothetical protein 49.3 0.007
>gi|648626869|ref|WP_026318620.1| hypothetical protein [Alistipes onderdonkii]
Length=231
Score = 233 bits (595), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 120/231 (52%), Positives = 149/231 (65%), Gaps = 9/231 (4%)
Query 370 LSGGTRFRRRNYHFNDDGYFMEITSIVPRVYYPSYINPTSRQISLGQQYAPALDNIAMQG 429
+SGG F+RR +HFN+ GYFMEITS+VP V YP+Y+NPT Q +LGQ+YAPALDNI MQ
Sbjct 1 MSGGDSFKRRTFHFNESGYFMEITSVVPTVMYPNYLNPTLLQTNLGQRYAPALDNIQMQP 60
Query 430 LKASTVFGEVQ-NLGANTVTYANS--------TLSIPGFKLQESNYVGYEPAWSELMTAV 480
L T+ G N G+ + ++ + T+++ E VGY+PAW+ELMT V
Sbjct 61 LTVPTLLGNAYFNTGSGSYSHVLNHMGTGELRTVAVDKLSAAEGIAVGYQPAWAELMTGV 120
Query 481 SKPHGRLCNDLDYWVLSRDYGRNLASVMDTPAYSDFIKAAGTYVDELSLQRLTAFLKRIY 540
SKPHGRLCNDLDYW R YG L S D S F++ G VD L ++ A+LK Y
Sbjct 121 SKPHGRLCNDLDYWAFQRRYGTVLYSSNDAQDASVFLEELGNEVDTLDVETFNAWLKNTY 180
Query 541 VSPSSCPYILCGDFNYVFYDQRPTAENFVLDNVADIVVFREKSKVNVATTL 591
VS PYIL +NYVF D P A+NFVLDN A+I V+REKSKVNV TL
Sbjct 181 VSTDFVPYILPAMYNYVFADTDPNAQNFVLDNSAEISVYREKSKVNVPNTL 231
>gi|547312923|ref|WP_022044635.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
gi|524208404|emb|CCZ76639.1| putative uncharacterized protein [Alistipes finegoldii CAG:68]
Length=338
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 123/326 (38%), Gaps = 70/326 (21%)
Query 281 AVDVSVS-GNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDNTC-PAFL 338
A+D+++S G SV++ + +++Q +MD F GGR D + + + K S P FL
Sbjct 41 ALDLNISTGFSVAVPELRLRTKIQNWMDRLFVSGGRVGDVFRTLWGTKSSAIYVNKPDFL 100
Query 339 GSDSFDMNVNTLY-----QTTGFEDNSSPLGAFSGQLSGGTRFRRRNYHFNDDGYFMEIT 393
G +N + + +G + N L A + + +Y+ + G FM IT
Sbjct 101 GVWQASINPSNVRAMANGSASGEDANLGQLAACVDRYCDFSGHSGIDYYAKEPGTFMLIT 160
Query 394 SIVPRVYYPSYINPTSRQISLGQQYAPALDNIAMQ-----------------GL--KAST 434
+VP Y ++P IS G + P L+ I Q GL +AS
Sbjct 161 MLVPEPAYSQGLHPDLASISFGDDFNPELNGIGFQLVPRHRFSMMPRGFNFTGLDQEASP 220
Query 435 VFGEVQNLGANTVTYANSTLSIPGFKLQESNYVGYEPAWSELMTAVSKPHGRLC--NDLD 492
FG G + N VG E AWS L T S+ HG +
Sbjct 221 WFGHT---GTGVLVDPNMV------------SVGEEVAWSWLRTDYSRLHGDFAQNGNYQ 265
Query 493 YWVLSRDYGRNLASVMDTPAYSDFIKAAGTYVDELSLQRLTAFLKRIYVSPSSCPYILCG 552
YWVL+R + D + + GTY++ L
Sbjct 266 YWVLTRRFTTYFPD--DGTGFYQDGEYTGTYINPL------------------------- 298
Query 553 DFNYVFYDQRPTAENFVLDNVADIVV 578
D+ YVF DQ A NF D+ V
Sbjct 299 DWQYVFVDQTLMAGNFAYYGTFDLNV 324
>gi|517172762|ref|WP_018361580.1| hypothetical protein [Prevotella nanceiensis]
Length=568
Score = 62.0 bits (149), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 64/261 (25%), Positives = 112/261 (43%), Gaps = 40/261 (15%)
Query 291 VSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQ--DNTCPAFLGSDSFDMNVN 348
+S+ +I A +++ + G + E+ F + + + D C G DS ++ V
Sbjct 304 ISVADIRNAFALEKLASVTMRAGKTYKEQMEAHFGISVEEGRDGRCTYIGGFDS-NIQVG 362
Query 349 TLYQT-----TGFEDNS------SPLGAFSGQLSGGTRFRRRNYHFNDDGYFMEITSIVP 397
+ Q+ TG +D S G +G SG RF + + G M I S+VP
Sbjct 363 DVTQSSGTTVTGTKDTSFGGYLGRTTGKATGSGSGHIRFDAKEH-----GILMCIYSLVP 417
Query 398 RVYYPSY-INPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANSTLSI 456
V Y S ++P ++I G + P +N+ MQ L A + + N AN+
Sbjct 418 DVQYDSKRVDPFVQKIERGDFFVPEFENLGMQPLFAKNISYKYNNNTANS---------- 467
Query 457 PGFKLQESNYVGYEPAWSELMTAVSKPHGRLCND--LDYWVLSRDYGR-----NLASVMD 509
+++ G++P +SE TA+ HG+ + L YW ++R G N+++
Sbjct 468 ---RIKNLGAFGWQPRYSEYKTALDINHGQFVHQEPLSYWTVARARGESMSNFNISTFKI 524
Query 510 TPAYSDFIKAAGTYVDELSLQ 530
P + D + A EL+ Q
Sbjct 525 NPKWLDDVFAVNYNGTELTDQ 545
>gi|547920049|ref|WP_022322420.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
gi|524592961|emb|CDD13573.1| capsid protein VP1 [Parabacteroides merdae CAG:48]
Length=553
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/222 (24%), Positives = 94/222 (42%), Gaps = 23/222 (10%)
Query 279 DAAVDVSVSGNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDN-TCPAF 337
+ + V+V +++ ++ ++ +QR+ + GG R + S F V+ S P F
Sbjct 299 NGTLKVNVDEMGININDLRTSNALQRWFERNARGGSRYIEQILSHFGVRSSDARLQRPQF 358
Query 338 LGSDSFDMNVNTLYQTTGFEDNSSPLGAFSGQ-LSGGTRFRRRNYHFNDDGYFMEITSIV 396
LG ++V+ + QT+ D +SP +G +S G ++Y F + GY + I SI
Sbjct 359 LGGGRMPISVSEVLQTSS-TDETSPQANMAGHGISAGINNGFKHY-FEEHGYIIGIMSIT 416
Query 397 PRVYYPSYINPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANSTLSI 456
PR Y + + Y P +++ Q +K +F + Y N T
Sbjct 417 PRSGYQQGVPRDFTKFDNMDFYFPEFAHLSEQEIKNQELFV------SEDAAYNNGTF-- 468
Query 457 PGFKLQESNYVGYEPAWSELMTAVSKPHGRLCNDLDYWVLSR 498
GY P ++E S+ HG +L +W L+R
Sbjct 469 -----------GYTPRYAEYKYHPSEAHGDFRGNLSFWHLNR 499
Score = 48.9 bits (115), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 39/71 (55%), Gaps = 0/71 (0%)
Query 7 KRNKKSRFKLFSGNPTSASWGTLIPTNVTRVVAGDDFSFQPGVGVQALPIVAPFMGSVCV 66
KR +++ F L + + + G L+P VV+GD F + V+ P+VAP M V V
Sbjct 11 KRPRRNAFNLSYESKLTLNMGELVPIMCMPVVSGDKFRVKTESLVRLAPLVAPMMHRVNV 70
Query 67 KKEYFFIPDRI 77
YFF+P+R+
Sbjct 71 FTHYFFVPNRL 81
>gi|492501782|ref|WP_005867318.1| hypothetical protein [Parabacteroides distasonis]
gi|409230408|gb|EKN23272.1| hypothetical protein HMPREF1059_03257 [Parabacteroides distasonis
CL09T03C24]
Length=538
Score = 57.0 bits (136), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/217 (24%), Positives = 95/217 (44%), Gaps = 23/217 (11%)
Query 284 VSVSGNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDN-TCPAFLGSDS 342
V+V VS+ ++ ++ +QR+ + G R + S F V+ S P FLG
Sbjct 289 VNVDELGVSINDLRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGR 348
Query 343 FDMNVNTLYQTTGFEDNSSPLGAFSGQ-LSGGTRFRRRNYHFNDDGYFMEITSIVPRVYY 401
++V+ + QT+ D++SP +G +S G + Y F + GY + I SI PR Y
Sbjct 349 TPISVSEVLQTSA-TDSTSPQANMAGHGISAGVNHGFKRY-FEEHGYIIGIMSIRPRTGY 406
Query 402 PSYINPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANSTLSIPGFKL 461
+ R+ Y P ++ Q +K V+ + Q +N T+
Sbjct 407 QQGVPKDFRKFDNMDFYFPEFAHLGEQEIKNEEVYLQ-QTPASNNGTF------------ 453
Query 462 QESNYVGYEPAWSELMTAVSKPHGRLCNDLDYWVLSR 498
GY P ++E ++++ HG ++ +W L+R
Sbjct 454 ------GYTPRYAEYKYSMNEVHGDFRGNMAFWHLNR 484
Score = 53.1 bits (126), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/90 (38%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query 7 KRNKKSRFKLFSGNPTSASWGTLIPTNVTRVVAGDDFSFQPGVGVQALPIVAPFMGSVCV 66
KR +++ F L N +A+ G L+P VV GD F + V+ P+VAP M V V
Sbjct 11 KRPRRNVFNLSYENKLTANAGELVPIMCKPVVPGDKFRVNTEMLVRLAPLVAPMMHRVDV 70
Query 67 KKEYFFIPDR-IYNIDRQLNFQGV--TDTP 93
YFF+P+R ++N +GV TDTP
Sbjct 71 FTHYFFVPNRLLWNQWEDFITKGVDGTDTP 100
>gi|649555287|gb|KDS61824.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649560568|gb|KDS66876.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649561020|gb|KDS67307.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649562724|gb|KDS68908.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=541
Score = 52.8 bits (125), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 58/118 (49%), Gaps = 2/118 (2%)
Query 7 KRNKKSRFKLFSGNPTSASWGTLIPTNVTRVVAGDDFSFQPGVGVQALPIVAPFMGSVCV 66
KR +++ F L N + + G LIP VV GD F + V+ P+VAP M V V
Sbjct 11 KRPRRNVFNLSYENKLTVNAGELIPIMCKPVVPGDKFRVNTEMLVRLAPLVAPMMHRVDV 70
Query 67 KKEYFFIPDR-IYNIDRQLNFQGVTDTPNTVYKPSMAPPIPFDISKSMGDKVDISVSD 123
YFF+P+R I+N +GV T + V+ P+ + P D + + D S+ D
Sbjct 71 FTHYFFVPNRLIWNKWEDFITKGVDGTDSPVF-PTYSFPSTVDTANAHNSFGDGSLWD 127
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (43%), Gaps = 23/210 (11%)
Query 291 VSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDN-TCPAFLGSDSFDMNVNT 349
V++ +I ++ +QR+ + G R + S F V+ S P FLG ++V+
Sbjct 299 VNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSE 358
Query 350 LYQTTGFEDNSSPLGAFSGQ-LSGGTRFRRRNYHFNDDGYFMEITSIVPRVYYPSYINPT 408
+ QT+ D++SP +G +S G Y F + GY M I SI PR Y +
Sbjct 359 VLQTSS-TDSTSPQANMAGHGISAGVNHGFTRY-FEEHGYIMGIMSIRPRTGYQQGVPKD 416
Query 409 SRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANSTLSIPGFKLQESNYVG 468
R+ Y P ++ Q +K ++ ++ AN T+ G
Sbjct 417 FRKFDNMDFYFPEFAHLGEQEIKNEELYLN-ESDAANEGTF------------------G 457
Query 469 YEPAWSELMTAVSKPHGRLCNDLDYWVLSR 498
Y P ++E + ++ HG ++ +W L+R
Sbjct 458 YTPRYAEYKYSQNEVHGDFRGNMAFWHLNR 487
>gi|649569140|gb|KDS75238.1| capsid family protein, partial [Parabacteroides distasonis str.
3999B T(B) 6]
Length=390
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (43%), Gaps = 23/210 (11%)
Query 291 VSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDN-TCPAFLGSDSFDMNVNT 349
V++ +I ++ +QR+ + G R + S F V+ S P FLG ++V+
Sbjct 148 VNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSE 207
Query 350 LYQTTGFEDNSSPLGAFSGQ-LSGGTRFRRRNYHFNDDGYFMEITSIVPRVYYPSYINPT 408
+ QT+ D++SP +G +S G Y F + GY M I SI PR Y +
Sbjct 208 VLQTSS-TDSTSPQANMAGHGISAGVNHGFTRY-FEEHGYIMGIMSIRPRTGYQQGVPKD 265
Query 409 SRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANSTLSIPGFKLQESNYVG 468
R+ Y P ++ Q +K ++ ++ AN T+ G
Sbjct 266 FRKFDNMDFYFPEFAHLGEQEIKNEELYLN-ESDAANEGTF------------------G 306
Query 469 YEPAWSELMTAVSKPHGRLCNDLDYWVLSR 498
Y P ++E + ++ HG ++ +W L+R
Sbjct 307 YTPRYAEYKYSQNEVHGDFRGNMAFWHLNR 336
>gi|649557305|gb|KDS63784.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 4]
gi|649559156|gb|KDS65543.1| capsid family protein [Parabacteroides distasonis str. 3999B
T(B) 6]
Length=245
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 90/210 (43%), Gaps = 23/210 (11%)
Query 291 VSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKLSQDN-TCPAFLGSDSFDMNVNT 349
V++ +I ++ +QR+ + G R + S F V+ S P FLG ++V+
Sbjct 3 VNINDIRTSNALQRWFERNARSGSRYIEQILSHFGVRSSDARLQRPQFLGGGRTPISVSE 62
Query 350 LYQTTGFEDNSSPLGAFSGQ-LSGGTRFRRRNYHFNDDGYFMEITSIVPRVYYPSYINPT 408
+ QT+ D++SP +G +S G Y F + GY M I SI PR Y +
Sbjct 63 VLQTSS-TDSTSPQANMAGHGISAGVNHGFTRY-FEEHGYIMGIMSIRPRTGYQQGVPKD 120
Query 409 SRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANSTLSIPGFKLQESNYVG 468
R+ Y P ++ Q +K ++ ++ AN T+ G
Sbjct 121 FRKFDNMDFYFPEFAHLGEQEIKNEELYLN-ESDAANEGTF------------------G 161
Query 469 YEPAWSELMTAVSKPHGRLCNDLDYWVLSR 498
Y P ++E + ++ HG ++ +W L+R
Sbjct 162 YTPRYAEYKYSQNEVHGDFRGNMAFWHLNR 191
>gi|494308783|ref|WP_007173938.1| hypothetical protein [Prevotella bergensis]
gi|270333035|gb|EFA43821.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=553
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 54/228 (24%), Positives = 97/228 (43%), Gaps = 31/228 (14%)
Query 281 AVDVSVSGNSVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKL--SQDNTCPAFL 338
VD S S+ ++ A + + + + G D + + V++ S+D
Sbjct 286 GVDTDSSEGDFSVSSLRAAFAVDKLLSVTMRAGKTFQDQMRAHYGVEIPDSRDGRVNYLG 345
Query 339 GSDSFDMNVNTLYQTTG-----FEDNSSPLGAFSGQLSGGTRFRRRNYHFNDDGYFMEIT 393
G DS DM V+ + QT+G ++ + LG +G+ +G R R + + G M I
Sbjct 346 GFDS-DMQVSDVTQTSGTTATEYKPEAGYLGRVAGKGTGSGR-GRIVFDAKEHGVLMCIY 403
Query 394 SIVPRVYYP-SYINPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQNLGANTVTYANS 452
S+VP++ Y + ++P ++ + P +N+ MQ L +S + N V
Sbjct 404 SLVPQIQYDCTRLDPMVDKLDRFDYFTPEFENLGMQPLNSSYISSFCTTDPKNPV----- 458
Query 453 TLSIPGFKLQESNYVGYEPAWSELMTAVSKPHGRLC--NDLDYWVLSR 498
+GY+P +SE TA+ HG+ + L W +SR
Sbjct 459 --------------LGYQPRYSEYKTALDVNHGQFAQSDALSSWSVSR 492
>gi|494306153|ref|WP_007173049.1| hypothetical protein [Prevotella bergensis]
gi|270333881|gb|EFA44667.1| putative capsid protein (F protein) [Prevotella bergensis DSM
17361]
Length=519
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 60/238 (25%), Positives = 104/238 (44%), Gaps = 37/238 (16%)
Query 275 SSFTDAAVDVSVSGN----SVSMRNITFASRMQRYMDLAFAGGGRNSDFYESQFDVKL-- 328
S+FT V V N SVS FA + + + + G D + + V++
Sbjct 244 SNFTQLNFPVDVDNNLGYFSVSSLRSAFA--VDKLLSVTMRAGKTFQDQMRAHYGVEIPD 301
Query 329 SQDNTCPAFLGSDSFDMNVNTLYQTTG-----FEDNSSPLGAFSGQLSGGTRFRRRNYHF 383
S+D G DS D+ V+ + QT+G ++ + LG +G+ +G R R +
Sbjct 302 SRDGRVNYLGGFDS-DLQVSDVTQTSGTTATEYKPEAGYLGRIAGKGTGSGR-GRIVFDA 359
Query 384 NDDGYFMEITSIVPRVYYP-SYINPTSRQISLGQQYAPALDNIAMQGLKASTVFGEVQNL 442
+ G M I S+VP++ Y + ++P ++ + P +N+ MQ L +S +
Sbjct 360 KEHGVLMCIYSLVPQIQYDCTRLDPMVDKLDRFDFFTPEFENLGMQPLNSSYI------- 412
Query 443 GANTVTYANSTLSIPGFKLQESNYVGYEPAWSELMTAVSKPHGRLCND--LDYWVLSR 498
S+ P K + +GY+P +SE TA+ HG+ + L W +SR
Sbjct 413 ---------SSFCTPDPK---NPVLGYQPRYSEYKTALDINHGQFAQNDALSSWSVSR 458
Lambda K H a alpha
0.318 0.133 0.394 0.792 4.96
Gapped
Lambda K H a alpha sigma
0.267 0.0410 0.140 1.90 42.6 43.6
Effective search space used: 4376806011489